| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081470
Identifier: 99081470
GI number: 99081470
Start: 1736144
End: 1738018
Strand: Reverse
Name: 99081470
Synonym: TM1040_1629
Alternate gene names: NA
Gene position: 1738018-1736144 (Counterclockwise)
Preceding gene: 99081471
Following gene: 99081467
Centisome position: 54.3
GC content: 60.11
Gene sequence:
>1875_bases ATGACGCAGGATAGCGATGCGCTGCAAGCGGATTTCGAAAATGAAGAAGTGATCGCTCCGATGGATGATGGTCCGCCACC TCAGAAACCGAGAGGACCAATTGGAAAATCGGGCGCTGGAGCGGGTAGGGCGGGGCGTGGTGGTAAGCAGGGCAGCGGCA AGCCGTCATCGATCTTGCCAGAAGGATTCCCCGTGCAGCCGCTCGGTATGTCTGCGGGAAAGTACTATTTCCTCAATGCC CGCGGTGAGAGAATCGATTTGACCGCAGGCGCTTTGAGTCAGCGTGCCAATCTGGTGTCATTGCTGGCTGGCAGCACAAC GCCGAAACGGCACCTGAAAGATATCGCTCCGCCGGACGCGCGCAAGGATACAGATTTCAACCCTGCAAATGCGGCTGACA AGCTCATGCAGGCCTGTGCCGAAATGCCGCTTTATGATCCATCGAAACCGGTCCGCCATTTCGGGACTTGGCGTGGCGGA TCTGTGCATCCGGTTGTCCACCTCGGCGAAACGGTCGAGACCTCATCGGAAGAAGAGGTTGTCGGGCGCATGATCGGTAG TGACCTCTATCCCGCAGTGCCGACGCTGGGCCTCCCGGATGGGGTCGCGGCCACTGCAGAAGAGATGAACATCATCCGGA TGGCGCTTCGCGATGGGTGGAACTGGGTGTCTCCAGATGCCGTGGATCTGGTGATAGGTTGGATTGGTCAGGCGGCACTA GGCCAGTACCCCCGATGGCGCAGCCATATGTGGATCCGTGGGCGTTCTGGTGCCGGTAAAACAACGTTGCTCGAGGTGAT ATCTTCGCTGCTAGGTGGGATGTCGACAGGTGTGAAGAGCAGCGGGTCATCGGCCTCGATCAGGCAGACAACCAACCGGA TGGCGATTGCGCGGATCTTTGATGAGGCCGAGGGCACCGGGACCGGCGACATCGAAGATGTAATCGCTCTGTTTCGTCTG ATGTCCGATGCGCATGGCGCGCGGGTGGAGCGAGGGACCTCTGACCATACTGGCATTCGCTTTGAGATCTACGGAGCGGG CCTTCTGGGCTCGATCATTCCAGGATCGATGACGCCACAGGACAGATCCCGGTTTGTCGTTGTTCCTCTGAAGGTTAGAG AGAAGTCTTCAGATCCGGCGCATGACGCGGTCGAGCTCGACAAGTTGGAACGAAGGGCAAAGGAGCTTGGCCCCCGGGTT TGGAGGCGCATGCTAAGCCTAGCGTCCCAGCGTTGGGATAGCACGTTTCGGGTTTACAACAGCCTTGTGCAGAGCCTCGG CGCCCAGGCACGTGCAGGAGACACGGTAGGCGCATTGCTTGCCGGCTGGGACCTGATGCTGTTCGAGAGGCCGCTGGTGG ACCCTGAGACAAATCAGGCCGATCCTAAGCGCATGGAGCGCGCTCTGGCCATGGCACTCCCGCTTGTCGAGGAAACCCGC GAGGCTGAGGAGGAGGGCGAAGGTGAGCGCCTGCTGACGTGGATCTTCGGAGCGATGATCCACAAGGATCACGGTGGCAT GATTTCGGTTAGCGAGTTGATCCAGACCATCCAGGAGTTCCAGGACGTGAAGTCGGGCGAATACCAGAACAAGCTCCTCG CTCGATTGGGGCTGAGGGTCATGCCGGGCGAGCGCGGGCAGCGCGACCTCTTCGTGGCAAACGGTGAGAACCCGCAGCTG AACAAGGCGCTCGCGAACACGCGGTGGCGTGGCGGTGGGCACCGCGCAGCGCTGGATACTATGCCTGAGGTGGCTCCTGC GCCAAAGCCAGTCAGAGTTGATGGTAGGCCCAAGAGGGGCCTCGTTGTGCCCGCGCGTTTCCTCCCCGGCTATATCAAAG AAACCGCCTCGAACGAGGGGGAGGATGGCATCTGA
Upstream 100 bases:
>100_bases AGGAATGGTGCCTGTCGCTGTTTCGGGCAGCGACGCTCGCGCACGAGTTTAGTCAATCAAAAGAGTCCTAACGGGCCAAT TGCAGGAAAGGAGGGCAGGC
Downstream 100 bases:
>100_bases TAGGTTGGATGGGCGTTACGTTTGAGCTCGAGCGTAACGCAAACGTAACGCCTTAAGTAACGGAGGCAATGCATTGAAAA TAATTCAGAATATATGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 624; Mature: 623
Protein sequence:
>624_residues MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGMSAGKYYFLNA RGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGG SVHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRL MSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRV WRRMLSLASQRWDSTFRVYNSLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQL NKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI
Sequences:
>Translated_624_residues MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGMSAGKYYFLNA RGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGG SVHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRL MSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRV WRRMLSLASQRWDSTFRVYNSLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQL NKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI >Mature_623_residues TQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGMSAGKYYFLNAR GERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGGS VHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAALG QYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRLM SDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVW RRMLSLASQRWDSTFRVYNSLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETRE AEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQLN KALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67607; Mature: 67475
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILP CCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGFPVQPLGMSAGKYYFLNARGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDA CCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC RKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGGSVHPVVHLGETVETSSEEEV CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCHHCCCCHHHH VGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIF CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH DEAEGTGTGDIEDVIALFRLMSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQ HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCC DRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVWRRMLSLASQRWDSTFRVYN CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR HHHHHHCCCCCCCCHHHHHHHCCHHEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRV HHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEE MPGERGQRDLFVANGENPQLNKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRG CCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCC LVVPARFLPGYIKETASNEGEDGI EEECHHHCCHHHHHHCCCCCCCCC >Mature Secondary Structure TQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILP CCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGFPVQPLGMSAGKYYFLNARGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDA CCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC RKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGGSVHPVVHLGETVETSSEEEV CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCHHCCCCHHHH VGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIF CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH DEAEGTGTGDIEDVIALFRLMSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQ HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCC DRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVWRRMLSLASQRWDSTFRVYN CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR HHHHHHCCCCCCCCHHHHHHHCCHHEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRV HHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEE MPGERGQRDLFVANGENPQLNKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRG CCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCC LVVPARFLPGYIKETASNEGEDGI EEECHHHCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA