| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081450
Identifier: 99081450
GI number: 99081450
Start: 1717238
End: 1718308
Strand: Reverse
Name: 99081450
Synonym: TM1040_1609
Alternate gene names: NA
Gene position: 1718308-1717238 (Counterclockwise)
Preceding gene: 99081451
Following gene: 99081449
Centisome position: 53.68
GC content: 60.78
Gene sequence:
>1071_bases ATGAGCGATCCGACGATCACACCGCCACCAGATGCACCATCGCGTCAGCAGCCTTCTACCTTCTCTGCGCGGGGGGATGC GTTCTTTGCCTGGATGGTCACATTTGCTGCTGAGGTAACAACTGTCATTTCGTGGGTCTCAGAAAAGGTCACCGAAATCG CGGGCAGTGTCAGTGCTGCGTCTGGCAGTGCTGCTGCGGCTGCGGGTAGCGCCTCGGAAGCCGCACAGTCTGAACTGATT GCATCGGGCGCGGCGAACTATCGGGGCGACTATGATGCTGGTACGCTGTACGCGGTGGGCGAGAGCGTGTCTTACACGGG CAGCGTATTCGTCAAGAAGACCACTGCGCCCGCTGGAACAACCCCGGTTGACGGGACGGATTGGCTGGAGCTGGGGGGCG GTGGTGCTGCGGACTTCCAAGAGTTCACGTCAAGCGGTACGTGGACAAAGCCAGATGGGGCCACGTTTGTTCGTGTTGAG GTTGTTGGCGGTGGCGGCGGTGGCGGCAATATCACATCAAGCGGAAATGCTGGCGGCGGAGGTGGGGGTGAGGGGAGCCT AGGTTTGTTCTTGGCATCATCTCTTGGCTCGACCGAGACCGTAACAATTGGCGCTGGGGGTGCTGGTGCGCCCAGTGGTT CAACTGGTGATGCGTCGGTTGGCGGTGATAGCTCGTTTGGCTCTCATTTGATTGGCAGGGGTGGTGGCCTTGGTACGACT GGAAGTGTCAGCCCGTTCAGTAATGAGTGCGCTTCAGGGTCGGGTACGCAAGCCGTATACGTAACATCGACTGAGGCCCC GGGGCAGGGTGGATTTTCAGGTGGATCTGGGTCAATGGGGTACAACGGAGGCGGTGCTGTTATTGGCGGCGGTGGCGGTG GTGGATCACGGTCTTCGCAAGCTGGATCTGGAGGGGTATCGCAACTCGCGGGTAATGGCGGGGATGGGTCTGGCGCGGCA TCCACTAAGGGCGGTGACGGACAATCACCGGGTGGAGGTGGAGGCGCGTCGTCTAATGATGGCGGGGGCGGCGACGGCGG CGATGGTCGTGTTCGGGTATGGAGTTGGTAA
Upstream 100 bases:
>100_bases AGGCCAATGAGTTTTCCGTCTACGGATTTTACCAGTCCTTTCAAGTCGTTCCCCGCATCGGGAGCGTTTCGGAAGGCATT CTCGAACTGGAGAGTATCAC
Downstream 100 bases:
>100_bases TCATGAAATACGCAATCATTGAAAACGGTGTTGTAGTGAACATCGCAAAGGCCGATGCGCCACTTGCGTATAACTGGGTT GGTGCGGGAGGTGCGCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAAEVTTVISWVSEKVTEIAGSVSAASGSAAAAAGSASEAAQSELI ASGAANYRGDYDAGTLYAVGESVSYTGSVFVKKTTAPAGTTPVDGTDWLELGGGGAADFQEFTSSGTWTKPDGATFVRVE VVGGGGGGGNITSSGNAGGGGGGEGSLGLFLASSLGSTETVTIGAGGAGAPSGSTGDASVGGDSSFGSHLIGRGGGLGTT GSVSPFSNECASGSGTQAVYVTSTEAPGQGGFSGGSGSMGYNGGGAVIGGGGGGGSRSSQAGSGGVSQLAGNGGDGSGAA STKGGDGQSPGGGGGASSNDGGGGDGGDGRVRVWSW
Sequences:
>Translated_356_residues MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAAEVTTVISWVSEKVTEIAGSVSAASGSAAAAAGSASEAAQSELI ASGAANYRGDYDAGTLYAVGESVSYTGSVFVKKTTAPAGTTPVDGTDWLELGGGGAADFQEFTSSGTWTKPDGATFVRVE VVGGGGGGGNITSSGNAGGGGGGEGSLGLFLASSLGSTETVTIGAGGAGAPSGSTGDASVGGDSSFGSHLIGRGGGLGTT GSVSPFSNECASGSGTQAVYVTSTEAPGQGGFSGGSGSMGYNGGGAVIGGGGGGGSRSSQAGSGGVSQLAGNGGDGSGAA STKGGDGQSPGGGGGASSNDGGGGDGGDGRVRVWSW >Mature_355_residues SDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAAEVTTVISWVSEKVTEIAGSVSAASGSAAAAAGSASEAAQSELIA SGAANYRGDYDAGTLYAVGESVSYTGSVFVKKTTAPAGTTPVDGTDWLELGGGGAADFQEFTSSGTWTKPDGATFVRVEV VGGGGGGGNITSSGNAGGGGGGEGSLGLFLASSLGSTETVTIGAGGAGAPSGSTGDASVGGDSSFGSHLIGRGGGLGTTG SVSPFSNECASGSGTQAVYVTSTEAPGQGGFSGGSGSMGYNGGGAVIGGGGGGGSRSSQAGSGGVSQLAGNGGDGSGAAS TKGGDGQSPGGGGGASSNDGGGGDGGDGRVRVWSW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33218; Mature: 33087
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAAEVTTVISWVSEKVTEIAGSVSAA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGSAAAAAGSASEAAQSELIASGAANYRGDYDAGTLYAVGESVSYTGSVFVKKTTAPAGT CCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCC TPVDGTDWLELGGGGAADFQEFTSSGTWTKPDGATFVRVEVVGGGGGGGNITSSGNAGGG CCCCCCCEEEECCCCCHHHHHHHCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCC GGGEGSLGLFLASSLGSTETVTIGAGGAGAPSGSTGDASVGGDSSFGSHLIGRGGGLGTT CCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC GSVSPFSNECASGSGTQAVYVTSTEAPGQGGFSGGSGSMGYNGGGAVIGGGGGGGSRSSQ CCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC AGSGGVSQLAGNGGDGSGAASTKGGDGQSPGGGGGASSNDGGGGDGGDGRVRVWSW CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure SDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAAEVTTVISWVSEKVTEIAGSVSAA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGSAAAAAGSASEAAQSELIASGAANYRGDYDAGTLYAVGESVSYTGSVFVKKTTAPAGT CCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCC TPVDGTDWLELGGGGAADFQEFTSSGTWTKPDGATFVRVEVVGGGGGGGNITSSGNAGGG CCCCCCCEEEECCCCCHHHHHHHCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCC GGGEGSLGLFLASSLGSTETVTIGAGGAGAPSGSTGDASVGGDSSFGSHLIGRGGGLGTT CCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC GSVSPFSNECASGSGTQAVYVTSTEAPGQGGFSGGSGSMGYNGGGAVIGGGGGGGSRSSQ CCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC AGSGGVSQLAGNGGDGSGAASTKGGDGQSPGGGGGASSNDGGGGDGGDGRVRVWSW CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA