| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081451
Identifier: 99081451
GI number: 99081451
Start: 1718305
End: 1719249
Strand: Reverse
Name: 99081451
Synonym: TM1040_1610
Alternate gene names: NA
Gene position: 1719249-1718305 (Counterclockwise)
Preceding gene: 99081452
Following gene: 99081450
Centisome position: 53.71
GC content: 56.4
Gene sequence:
>945_bases ATGAGCCTGAGAATGATCGAGCCAGAGACGATTGACGACGCCGCATTTGTGTCTTCGACCGTTCCCGAAACTGACGCGCC CGTCTGGAATGCATCAACTGACTATCCGTTCTCTGATCCGGACAACCCAGAAGAGGTGATTGTCGAAGAGGGGCAACATG CCATTTACCGCGCTGTCTCTGCCTCGGGGCCCAGCCATGGTGGCGCAGTCGATCCTGCCACCGACACGGGGAACACCAAA TGGGTGAAAATCCGCTCTACCAACCGTTGGCGGGTCTTCGATGAGTATATCGGCGACCCGAGTGTCCAGGCAAATAGCGC GCAGTGGGTGATAACCGCGCCCAACGTGATCGACAGTGTGGCTTTGTTCGGGCTCTACGCCCTGTCGGTGACGGTCCTTG TTCGCGACAGTGGTGGGGCCGAGGTCTACAATCAGACATACTCACTGCAGGATGAGAACAGTGTGGTTGATCTCTACACC TACCTCACAAGTCCGATCATCCTCAGTGACCGCTTGGTCATCGCAGATATTCCGCCCTATGCGGGTGCAGAAGTGACGGT TACTGCGGAGGCACCCGGAGAGGACGTAGAGGTCGGGCAGATCGTGATCGGCCGGAAAGAAGAGATCGGCGTCACGATTG ATGAGATCCCGCTATCGATCCAGGACTTCTCCCGCAAAGAGCGCGACTCTGATTTTGGTCGGGTGTCGCTGTTGGAGAAG GACTTTGCAGACGAAATGCCCGTCGCATTTGTCTTCCCGACCTCGCGCGCTTCCTACCTAAAAAGTCGTCTGGCAAGCCG TCGCGCCAAATTGACGGTCTACAGCAGCGACGGGCCGTACAAGGCCAATGAGTTTTCCGTCTACGGATTTTACCAGTCCT TTCAAGTCGTTCCCCGCATCGGGAGCGTTTCGGAAGGCATTCTCGAACTGGAGAGTATCACATGA
Upstream 100 bases:
>100_bases TTCTGGAATCCCATGCGCGCGCAACGACTTACAACACAGGCAAGTCGATGCGAACGCACACCAAATGGGACAGAGATGGT GTGCCGAAGGAGCGGACTTA
Downstream 100 bases:
>100_bases GCGATCCGACGATCACACCGCCACCAGATGCACCATCGCGTCAGCAGCCTTCTACCTTCTCTGCGCGGGGGGATGCGTTC TTTGCCTGGATGGTCACATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSLRMIEPETIDDAAFVSSTVPETDAPVWNASTDYPFSDPDNPEEVIVEEGQHAIYRAVSASGPSHGGAVDPATDTGNTK WVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYT YLTSPIILSDRLVIADIPPYAGAEVTVTAEAPGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDSDFGRVSLLEK DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGSVSEGILELESIT
Sequences:
>Translated_314_residues MSLRMIEPETIDDAAFVSSTVPETDAPVWNASTDYPFSDPDNPEEVIVEEGQHAIYRAVSASGPSHGGAVDPATDTGNTK WVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYT YLTSPIILSDRLVIADIPPYAGAEVTVTAEAPGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDSDFGRVSLLEK DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGSVSEGILELESIT >Mature_313_residues SLRMIEPETIDDAAFVSSTVPETDAPVWNASTDYPFSDPDNPEEVIVEEGQHAIYRAVSASGPSHGGAVDPATDTGNTKW VKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYTY LTSPIILSDRLVIADIPPYAGAEVTVTAEAPGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDSDFGRVSLLEKD FADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGSVSEGILELESIT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34402; Mature: 34271
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRMIEPETIDDAAFVSSTVPETDAPVWNASTDYPFSDPDNPEEVIVEEGQHAIYRAVS CCCEECCCCCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHEECCCCEEEEEHH ASGPSHGGAVDPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSV CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHH ALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYTYLTSPIILSDRLVIADIPPY HHHHHHEEEEEEEEECCCCCEEECCEECCCCCCCEEEEEHHHCCCEEEECCEEEEECCCC AGAEVTVTAEAPGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDSDFGRVSLLEK CCCEEEEEECCCCCCCEECEEEECCCHHHCEEHHHCCCCHHHHHHHHCCCCCCEEEHHHH DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRI HHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEHHHHEECCCC GSVSEGILELESIT CCCCCCCEEEECCC >Mature Secondary Structure SLRMIEPETIDDAAFVSSTVPETDAPVWNASTDYPFSDPDNPEEVIVEEGQHAIYRAVS CCEECCCCCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHEECCCCEEEEEHH ASGPSHGGAVDPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSV CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHH ALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYTYLTSPIILSDRLVIADIPPY HHHHHHEEEEEEEEECCCCCEEECCEECCCCCCCEEEEEHHHCCCEEEECCEEEEECCCC AGAEVTVTAEAPGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDSDFGRVSLLEK CCCEEEEEECCCCCCCEECEEEECCCHHHCEEHHHCCCCHHHHHHHHCCCCCCEEEHHHH DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRI HHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEHHHHEECCCC GSVSEGILELESIT CCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA