Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081445

Identifier: 99081445

GI number: 99081445

Start: 1714865

End: 1715674

Strand: Reverse

Name: 99081445

Synonym: TM1040_1604

Alternate gene names: NA

Gene position: 1715674-1714865 (Counterclockwise)

Preceding gene: 99081446

Following gene: 99081444

Centisome position: 53.6

GC content: 61.23

Gene sequence:

>810_bases
ATGCAGAAGAACTTCGACCGAAGCCTTGATTGGGTTCTGGCCCATGAAGGCGGTTATGTGAACCACCCCAAGGATCCGGG
GGGAGCAACGAATATGGGCGTCACCCAGCGCACATATGATGCCGATCTGCGGCGTCGTCAGCTGTCATCTCGCAGCGTGA
AACTGATCACCATGGAAGAAGTGAAGGCGATCTATCGCAGCCAATACTGGGACAAGGTGGGTGGCGATGAGCTTCCCGGG
GGCTTGGACTACTGCGTCTTTGACTTCGCGGTAAACAGCGGTGTTTCGCGCGCTGTGAAGTTCATGCAGCGCCAGCTGGG
CGTCAAGGCTGATGGGATTGTCGGGGTGAACACCATGGAAGCCGTAGACCGCGCGGACGTCGAAGGGTTGATCCAGTCTA
TCTGTCAGGCTCGGTTCTCCTGGCTGAAGAAGCTGCGCCACTGGGGCACGTTTGGCCGCGGCTGGACACGCCGGGTGATG
GGGGAAAGCCTCGGCGTTCAGGCGCGCGACACCGGCGTGATCGATCGCGCTGTCTACCTCCATCGTGAACTTGCCGTCAT
TCACGCGCCGTCCTATCGCGAGGATGGTTCGGGGGCCCGCGCCGAAGACGGTGAACGGAGCCTGTCTGCCACGGTCAAGG
AGTTGATCACGTCTGGTAAGGGGTGGACCAATGGCGGCGCTTTGGGCGGCGGCGCAATCGCCCTCACACAGCTTCAAGGC
CCTGTTGCCTACGCCTTGGCCGCTGTGCTTCTGATTGCTGCTGTGACCGCCGCTCTGTACTTCCTGCGCTCGCAGGAGGC
TGCGGCATGA

Upstream 100 bases:

>100_bases
GAATACCGTGTGAACACTCTCTGGCGCATCCATCCGACGCAGGGCAGGGCACGCGAGATCAGGCGCACCAGCAACACATT
CACGATCAGCGGAGGCTAGA

Downstream 100 bases:

>100_bases
CCGGCTTGATCGCATTCCTCATGCGCATGGGGTTCGGCGGTATGGTGGACAAAGCCATCAGCCATTTGGAGCGCCGCGCT
GAGCTTCAAAACGACCGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYWDKVGGDELPG
GLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVM
GESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG
PVAYALAAVLLIAAVTAALYFLRSQEAAA

Sequences:

>Translated_269_residues
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYWDKVGGDELPG
GLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVM
GESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG
PVAYALAAVLLIAAVTAALYFLRSQEAAA
>Mature_269_residues
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYWDKVGGDELPG
GLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVM
GESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG
PVAYALAAVLLIAAVTAALYFLRSQEAAA

Specific function: Unknown

COG id: COG3926

COG function: function code R; Putative secretion activating protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29294; Mature: 29294

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEE
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH
VKAIYRSQYWDKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTME
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEECCHHHH
AVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
HRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG
HHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHCC
PVAYALAAVLLIAAVTAALYFLRSQEAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEE
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH
VKAIYRSQYWDKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTME
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEECCHHHH
AVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
HRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG
HHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHCC
PVAYALAAVLLIAAVTAALYFLRSQEAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA