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The map label for this gene is deoB [H]

Identifier: 99081411

GI number: 99081411

Start: 1677559

End: 1678773

Strand: Reverse

Name: deoB [H]

Synonym: TM1040_1570

Alternate gene names: 99081411

Gene position: 1678773-1677559 (Counterclockwise)

Preceding gene: 99081412

Following gene: 99081410

Centisome position: 52.45

GC content: 63.46

Gene sequence:

>1215_bases
ATGGCGCGTGCCTTTCTGGTTGTATTGGACTCGGTTGGTATCGGCGGCGCGCCGGATGCCGGGGCCTATTACAACAAGGA
TCTGCCCGATCTCGGGGCCAATACCGTCGCGCATATTGCACAGGCTTGTGCGGAGAAGCGCGCCGAGGAGGGGCGCCGGG
GCGGGCTGCATTTGCCAACGCTTGATGCGATGGGTCTGGGCGCGGCAGTGCGCCTTGCCTCCGGCCAGCCTGCGCCGGGT
CTTGATGCTGTGCCAGCCGGGCTTTGGGGCGCTGCGGTCGAGGTGAGCGCGGGCAAGGACACTCCCTCAGGCCACTGGGA
ACTTGCCGGCCTGCCAGTGCCATGGGACTGGGGCTATTTCCCCGAGGAGGGGGCAGCCTTTGATGCGGATCTGGTGGCGC
ATGTGGCACAGGCCGCCGGGGTCTCGGGAATCTTGGGGAACTGTCATGCTTCTGGCACCAGCATCATCGCGGAGCTTGGC
GCAGAACACCTGCGGACGGGGCTGCCGATCTGCTACACGTCGGCCGATAGCGTCTTTCAGATCGCTGCACATGAGGAGCA
TTTTGGCCTTGAGCGCTTGCTCAAGCTTTGCGCCGATATCGCGCCCTATCTGCATGCCCGCAGGGTGGGCCGCGTGATCG
CGCGTCCATTCGTGGGCTCCCCTGATGCAGGGTTTGAGCGCACCACCAATCGGCGCGACTATGCCATTAAACCTCCGGCC
CCGATCCTGACCGATTGGGTTCAGGCTGCCGGTGGACGTGTCCATGCCATCGGCAAGATTGGTGACATCTTCTCCATGCA
AGGCATTGATACACTTGAGAAAGGCTCTGATCAGGCTCTGATGCGCCATCTTGCCAATGCGGTGCAAAGCGCTGAAGACG
GCAGCCTGACCTTTGCAAATTTTGTCGAGTTTGACAGCCTTTATGGTCACCGCCGAGATGTCGCGGGCTATGCGCGGGCG
CTCGAGTGGTTCGATCGCGAGATTACCGGAATCCTCGCGCAGTTGCGTCCGGGGGACCTGATGGTGCTGACCGCAGACCA
CGGCAACGATCCAAGCTGGCCCGGGACCGACCATACCCGCGAACAGGTGCCGGTGCTTGTTGCAGGGGCGGGGTCGGGGT
GCATCGGAACCGTGGGGTTTGTCGACATCGCCGCGTCGGTTGCAGCGCATCTGGGGGTACCCTCCGAGGGGCCGGGGCGC
AGCTTTTTGCCCTGA

Upstream 100 bases:

>100_bases
CAGAGGCCGCGCAAGATGCGATCTCGGCCTTGCGGGCGGCGGTGAGGCTTGCACCTGCCGCACCCGACCTGCCGCCGCTG
TTGCATGAGAGGATCAGCTG

Downstream 100 bases:

>100_bases
ACGCGCCAAGGCGCGACCGGAAAACGCCTTGCTTGTCCGGGGGCGGGGCGCTTATGAAAACAAAAAACAAAAGGAGTGCG
CCTGATGAGTGACCACCTGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MARAFLVVLDSVGIGGAPDAGAYYNKDLPDLGANTVAHIAQACAEKRAEEGRRGGLHLPTLDAMGLGAAVRLASGQPAPG
LDAVPAGLWGAAVEVSAGKDTPSGHWELAGLPVPWDWGYFPEEGAAFDADLVAHVAQAAGVSGILGNCHASGTSIIAELG
AEHLRTGLPICYTSADSVFQIAAHEEHFGLERLLKLCADIAPYLHARRVGRVIARPFVGSPDAGFERTTNRRDYAIKPPA
PILTDWVQAAGGRVHAIGKIGDIFSMQGIDTLEKGSDQALMRHLANAVQSAEDGSLTFANFVEFDSLYGHRRDVAGYARA
LEWFDREITGILAQLRPGDLMVLTADHGNDPSWPGTDHTREQVPVLVAGAGSGCIGTVGFVDIAASVAAHLGVPSEGPGR
SFLP

Sequences:

>Translated_404_residues
MARAFLVVLDSVGIGGAPDAGAYYNKDLPDLGANTVAHIAQACAEKRAEEGRRGGLHLPTLDAMGLGAAVRLASGQPAPG
LDAVPAGLWGAAVEVSAGKDTPSGHWELAGLPVPWDWGYFPEEGAAFDADLVAHVAQAAGVSGILGNCHASGTSIIAELG
AEHLRTGLPICYTSADSVFQIAAHEEHFGLERLLKLCADIAPYLHARRVGRVIARPFVGSPDAGFERTTNRRDYAIKPPA
PILTDWVQAAGGRVHAIGKIGDIFSMQGIDTLEKGSDQALMRHLANAVQSAEDGSLTFANFVEFDSLYGHRRDVAGYARA
LEWFDREITGILAQLRPGDLMVLTADHGNDPSWPGTDHTREQVPVLVAGAGSGCIGTVGFVDIAASVAAHLGVPSEGPGR
SFLP
>Mature_403_residues
ARAFLVVLDSVGIGGAPDAGAYYNKDLPDLGANTVAHIAQACAEKRAEEGRRGGLHLPTLDAMGLGAAVRLASGQPAPGL
DAVPAGLWGAAVEVSAGKDTPSGHWELAGLPVPWDWGYFPEEGAAFDADLVAHVAQAAGVSGILGNCHASGTSIIAELGA
EHLRTGLPICYTSADSVFQIAAHEEHFGLERLLKLCADIAPYLHARRVGRVIARPFVGSPDAGFERTTNRRDYAIKPPAP
ILTDWVQAAGGRVHAIGKIGDIFSMQGIDTLEKGSDQALMRHLANAVQSAEDGSLTFANFVEFDSLYGHRRDVAGYARAL
EWFDREITGILAQLRPGDLMVLTADHGNDPSWPGTDHTREQVPVLVAGAGSGCIGTVGFVDIAASVAAHLGVPSEGPGRS
FLP

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=46.6019417475728, Blast_Score=355, Evalue=2e-99,
Organism=Escherichia coli, GI1789781, Length=431, Percent_Identity=29.0023201856148, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 42266; Mature: 42135

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAFLVVLDSVGIGGAPDAGAYYNKDLPDLGANTVAHIAQACAEKRAEEGRRGGLHLPT
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LDAMGLGAAVRLASGQPAPGLDAVPAGLWGAAVEVSAGKDTPSGHWELAGLPVPWDWGYF
HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCC
PEEGAAFDADLVAHVAQAAGVSGILGNCHASGTSIIAELGAEHLRTGLPICYTSADSVFQ
CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHCHHHHHCCCCEEEECCCCEEE
IAAHEEHFGLERLLKLCADIAPYLHARRVGRVIARPFVGSPDAGFERTTNRRDYAIKPPA
EECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC
PILTDWVQAAGGRVHAIGKIGDIFSMQGIDTLEKGSDQALMRHLANAVQSAEDGSLTFAN
HHHHHHHHHCCCEEEEECCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCCEEHHH
FVEFDSLYGHRRDVAGYARALEWFDREITGILAQLRPGDLMVLTADHGNDPSWPGTDHTR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
EQVPVLVAGAGSGCIGTVGFVDIAASVAAHLGVPSEGPGRSFLP
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARAFLVVLDSVGIGGAPDAGAYYNKDLPDLGANTVAHIAQACAEKRAEEGRRGGLHLPT
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LDAMGLGAAVRLASGQPAPGLDAVPAGLWGAAVEVSAGKDTPSGHWELAGLPVPWDWGYF
HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCC
PEEGAAFDADLVAHVAQAAGVSGILGNCHASGTSIIAELGAEHLRTGLPICYTSADSVFQ
CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHCHHHHHCCCCEEEECCCCEEE
IAAHEEHFGLERLLKLCADIAPYLHARRVGRVIARPFVGSPDAGFERTTNRRDYAIKPPA
EECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC
PILTDWVQAAGGRVHAIGKIGDIFSMQGIDTLEKGSDQALMRHLANAVQSAEDGSLTFAN
HHHHHHHHHCCCEEEEECCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCCEEHHH
FVEFDSLYGHRRDVAGYARALEWFDREITGILAQLRPGDLMVLTADHGNDPSWPGTDHTR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
EQVPVLVAGAGSGCIGTVGFVDIAASVAAHLGVPSEGPGRSFLP
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]