| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081407
Identifier: 99081407
GI number: 99081407
Start: 1673331
End: 1673972
Strand: Reverse
Name: 99081407
Synonym: TM1040_1566
Alternate gene names: NA
Gene position: 1673972-1673331 (Counterclockwise)
Preceding gene: 99081409
Following gene: 99081405
Centisome position: 52.3
GC content: 48.13
Gene sequence:
>642_bases TTGCACACAAAGACAATGTCTGGGTCAAATTGGTTCACTGCGCGGAAAGGGTATACATTGTTCAAACGATTGTTCGGCAA ACGACAATTTCAGTACAAGTGCAACGCGTGTGGTGAGCTTCACCAAGGATCGCCGTCGTTCTCGTTTCGGTTTCCGACAT ACTATTTCGATGTCCCCGAGGGGGACCGAAAAGATCGGACTTTCGCCTCGGATGATCTTTGTCATATTAAACCTGCAAAA GGTGATGACCAAGGCGACGAGATTTTCTGTATTCGTGTTGTCCTTGAGATCCCGATCCAAGGTACCGATGCCGTGGTTAC TTGGGGAGTTTGGGTTACTCAGTCTAAAGATAGCTTCGAAAAATACGTCGAAACCTTTGGTCAGGATCAGTCGTCGCTCG GGAGCTTTGGGTGGTTGCCCGTCTACATGCCGTTTTACAATCTATCTGATGCTGGCGCTCCTCTTGAGCACCTTGAATGT GATATTCAATGGAGTGCCAAGGGGCAAAGACCAAAGGCCTATCTTTGGGACAGTTCCCATCCGCTTTCCATTGATCAACG CGAAGGGATCAGCTGGAGAAAGGCAATAAAAATAGCCAATCTCGCAAATCACGCGTGCTCAAGGAAAGATCAGGTCGCTT AA
Upstream 100 bases:
>100_bases GTGCGGTATCAGTGCTGGAGGATATTGAGAGTATTTGCTTGAAAGCACTCATTTGTGATGCGCGTCACGCAGGAACGGCC TGTGCCTGAAGCTACCTCCA
Downstream 100 bases:
>100_bases CAGAGGAAGACCGACATTCGCGTCGTCGCTGCGAACTGGTGCTTCGTCCCGCGTGGTATCCATCTATGAATGGGGTGGTG AATGTCAGCAATTGCAGATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MHTKTMSGSNWFTARKGYTLFKRLFGKRQFQYKCNACGELHQGSPSFSFRFPTYYFDVPEGDRKDRTFASDDLCHIKPAK GDDQGDEIFCIRVVLEIPIQGTDAVVTWGVWVTQSKDSFEKYVETFGQDQSSLGSFGWLPVYMPFYNLSDAGAPLEHLEC DIQWSAKGQRPKAYLWDSSHPLSIDQREGISWRKAIKIANLANHACSRKDQVA
Sequences:
>Translated_213_residues MHTKTMSGSNWFTARKGYTLFKRLFGKRQFQYKCNACGELHQGSPSFSFRFPTYYFDVPEGDRKDRTFASDDLCHIKPAK GDDQGDEIFCIRVVLEIPIQGTDAVVTWGVWVTQSKDSFEKYVETFGQDQSSLGSFGWLPVYMPFYNLSDAGAPLEHLEC DIQWSAKGQRPKAYLWDSSHPLSIDQREGISWRKAIKIANLANHACSRKDQVA >Mature_213_residues MHTKTMSGSNWFTARKGYTLFKRLFGKRQFQYKCNACGELHQGSPSFSFRFPTYYFDVPEGDRKDRTFASDDLCHIKPAK GDDQGDEIFCIRVVLEIPIQGTDAVVTWGVWVTQSKDSFEKYVETFGQDQSSLGSFGWLPVYMPFYNLSDAGAPLEHLEC DIQWSAKGQRPKAYLWDSSHPLSIDQREGISWRKAIKIANLANHACSRKDQVA
Specific function: Unknown
COG id: COG4899
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24327; Mature: 24327
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTKTMSGSNWFTARKGYTLFKRLFGKRQFQYKCNACGELHQGSPSFSFRFPTYYFDVPE CCCCCCCCCCEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCEEEEECCC GDRKDRTFASDDLCHIKPAKGDDQGDEIFCIRVVLEIPIQGTDAVVTWGVWVTQSKDSFE CCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHH KYVETFGQDQSSLGSFGWLPVYMPFYNLSDAGAPLEHLECDIQWSAKGQRPKAYLWDSSH HHHHHHCCCCHHCCCCCCEEEEEEEECCCCCCCCHHHEEEEEEECCCCCCCCEEEECCCC PLSIDQREGISWRKAIKIANLANHACSRKDQVA CCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MHTKTMSGSNWFTARKGYTLFKRLFGKRQFQYKCNACGELHQGSPSFSFRFPTYYFDVPE CCCCCCCCCCEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCEEEEECCC GDRKDRTFASDDLCHIKPAKGDDQGDEIFCIRVVLEIPIQGTDAVVTWGVWVTQSKDSFE CCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHH KYVETFGQDQSSLGSFGWLPVYMPFYNLSDAGAPLEHLECDIQWSAKGQRPKAYLWDSSH HHHHHHCCCCHHCCCCCCEEEEEEEECCCCCCCCHHHEEEEEEECCCCCCCCEEEECCCC PLSIDQREGISWRKAIKIANLANHACSRKDQVA CCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA