| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081409
Identifier: 99081409
GI number: 99081409
Start: 1675407
End: 1676660
Strand: Reverse
Name: 99081409
Synonym: TM1040_1568
Alternate gene names: NA
Gene position: 1676660-1675407 (Counterclockwise)
Preceding gene: 99081410
Following gene: 99081407
Centisome position: 52.38
GC content: 64.99
Gene sequence:
>1254_bases ATGAAAATAACTACAATTACGGCAGTATCCCTCATCTTGGCATCCGGCTTGGCAACTGGTGTCAGCGCGCAGCTGTCCTC CAAGACGGCGCAACCAGCAGAGTTTCCACCGGCGAGTTATCAGGGTCGTCAATATGTGGACAGCCGTGGCTGCATCTTTA TTCGCGCCGGTGTGGACGGCAATGTGACGTGGATTCCGCGTGTGAACCGCGCCCGTCAGCAGCTTTGTGGTGCGGAACCG TCCAACATCGCAGGCTCAACGCGCCAGCAGCCCCAAACGCAAGACCCGCGTCCCGATATCATCACTCTGACGCCGGATGA GGATCGTGTCGACGAGGCCGCCCCGGTGCGGCTGACCACGCCGACACCGGCGCGCACGCGCTCGATCGTGCCGCCTCCTG CGGTCAAACCAGAGCGCAGAGCCGAAGTCCCGACACCGGATGCGCGCGCGACCTCGCTTGCGCCTGCACGGCCCATTCGC GCTGCCGCGCCTCAGCCCGTTGCTGCGGCACCTGCGCCGGCAGCGCCTGTCGTTGCACCCGCACCGCGCCGCCCACTGCG CAATGCGGGCGATCCGTTGGATCAGATCACGCCCAACACGCGTATCCTGCCGGTGCACGTCTATCTGATGCGCCGACAGA GCGAGGGGCTTCAGGTGCCCGAGGGTTACCGCCCGGCCTGGGATGATGATCGATTGAATATCCGTCGGGTCGAGCAAACC ATCCGGCCGACCGTGATCAACCAACTCCCGGCAGTGCCGGAGGGGTACGAGTTGGCAGATCGTGCGGACAATCGGATGAA CATCCAACGCGGGCAGCGTTCTCCCCAAGGGGATGCGCAGATGGCGCAGGTCTGGTCCGACACGCTGCCACGGCGTTTGC TGGAGCAGCCGCTTGATAAAACACCCTTCGTCCTGAGGGATGCCAAGGCCAGATATGGGTATCTTGAGCCGCGCCAGGGC ACAGGTGTAGCCACCCGTTTGTCGAGCCGGGCAGCCCCGGATGCGACCCTGCCAGAGGCGGTTCCGTCTAAGCCACGCTA TGTTCGTGCCGTGACCCTTGCCTCCGAGGAGGAGGCCCGCCGCATTGCGCGTGAGCTGTCGGCGGCGACCGGGTTGCAGA TGCGTCTTGGCACGCTCACCCGTAACGGCCAGACCCTCAAGGTGGTGCTCGCGGGGCCCTTTACGGCGGGCGCGGATCGG GCGCTGCAGCGTATCCGTTCCGCAGGGTTCAGCGGAGCGCGGCTCAGCAAGTAG
Upstream 100 bases:
>100_bases TGGCGACGATCAGACGGATCGCGCCATATTGTTGCCCAGATTGCCTTTACTCAGTTGGGGATTTGAGGCATCCTGCCGCC ATATATTGTGGGGCAGTTGG
Downstream 100 bases:
>100_bases AGCAATGCGGCAAAACGCAAAGTATAGGCCGGGCATGCTCCCGGCCTTTTTGTTTGTAAACAGTGTTTTAGCCGCAGATG TTTTGAAGTTGGACCCAGTC
Product: sporulation related
Products: NA
Alternate protein names: Sporulation Domain-Containing Protein; Sporulation Domain Protein; Sporulation And Repeat Protein
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNRARQQLCGAEP SNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIR AAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQG TGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADR ALQRIRSAGFSGARLSK
Sequences:
>Translated_417_residues MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNRARQQLCGAEP SNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIR AAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQG TGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADR ALQRIRSAGFSGARLSK >Mature_417_residues MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNRARQQLCGAEP SNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIR AAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQG TGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADR ALQRIRSAGFSGARLSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45264; Mature: 45264
Theoretical pI: Translated: 11.25; Mature: 11.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDG CEEEHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCC NVTWIPRVNRARQQLCGAEPSNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTT CEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCEEEEC PTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIRAAAPQPVAAAPAPAAPVVAP CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT CCCCCCCCCCCCHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDK HHHHHHHHCCCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC TPFVLRDAKARYGYLEPRQGTGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEAR CCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH RIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADRALQRIRSAGFSGARLSK HHHHHHHHHCCCEEEEHEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDG CEEEHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCC NVTWIPRVNRARQQLCGAEPSNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTT CEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCEEEEC PTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIRAAAPQPVAAAPAPAAPVVAP CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT CCCCCCCCCCCCHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDK HHHHHHHHCCCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC TPFVLRDAKARYGYLEPRQGTGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEAR CCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH RIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADRALQRIRSAGFSGARLSK HHHHHHHHHCCCEEEEHEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA