Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081409

Identifier: 99081409

GI number: 99081409

Start: 1675407

End: 1676660

Strand: Reverse

Name: 99081409

Synonym: TM1040_1568

Alternate gene names: NA

Gene position: 1676660-1675407 (Counterclockwise)

Preceding gene: 99081410

Following gene: 99081407

Centisome position: 52.38

GC content: 64.99

Gene sequence:

>1254_bases
ATGAAAATAACTACAATTACGGCAGTATCCCTCATCTTGGCATCCGGCTTGGCAACTGGTGTCAGCGCGCAGCTGTCCTC
CAAGACGGCGCAACCAGCAGAGTTTCCACCGGCGAGTTATCAGGGTCGTCAATATGTGGACAGCCGTGGCTGCATCTTTA
TTCGCGCCGGTGTGGACGGCAATGTGACGTGGATTCCGCGTGTGAACCGCGCCCGTCAGCAGCTTTGTGGTGCGGAACCG
TCCAACATCGCAGGCTCAACGCGCCAGCAGCCCCAAACGCAAGACCCGCGTCCCGATATCATCACTCTGACGCCGGATGA
GGATCGTGTCGACGAGGCCGCCCCGGTGCGGCTGACCACGCCGACACCGGCGCGCACGCGCTCGATCGTGCCGCCTCCTG
CGGTCAAACCAGAGCGCAGAGCCGAAGTCCCGACACCGGATGCGCGCGCGACCTCGCTTGCGCCTGCACGGCCCATTCGC
GCTGCCGCGCCTCAGCCCGTTGCTGCGGCACCTGCGCCGGCAGCGCCTGTCGTTGCACCCGCACCGCGCCGCCCACTGCG
CAATGCGGGCGATCCGTTGGATCAGATCACGCCCAACACGCGTATCCTGCCGGTGCACGTCTATCTGATGCGCCGACAGA
GCGAGGGGCTTCAGGTGCCCGAGGGTTACCGCCCGGCCTGGGATGATGATCGATTGAATATCCGTCGGGTCGAGCAAACC
ATCCGGCCGACCGTGATCAACCAACTCCCGGCAGTGCCGGAGGGGTACGAGTTGGCAGATCGTGCGGACAATCGGATGAA
CATCCAACGCGGGCAGCGTTCTCCCCAAGGGGATGCGCAGATGGCGCAGGTCTGGTCCGACACGCTGCCACGGCGTTTGC
TGGAGCAGCCGCTTGATAAAACACCCTTCGTCCTGAGGGATGCCAAGGCCAGATATGGGTATCTTGAGCCGCGCCAGGGC
ACAGGTGTAGCCACCCGTTTGTCGAGCCGGGCAGCCCCGGATGCGACCCTGCCAGAGGCGGTTCCGTCTAAGCCACGCTA
TGTTCGTGCCGTGACCCTTGCCTCCGAGGAGGAGGCCCGCCGCATTGCGCGTGAGCTGTCGGCGGCGACCGGGTTGCAGA
TGCGTCTTGGCACGCTCACCCGTAACGGCCAGACCCTCAAGGTGGTGCTCGCGGGGCCCTTTACGGCGGGCGCGGATCGG
GCGCTGCAGCGTATCCGTTCCGCAGGGTTCAGCGGAGCGCGGCTCAGCAAGTAG

Upstream 100 bases:

>100_bases
TGGCGACGATCAGACGGATCGCGCCATATTGTTGCCCAGATTGCCTTTACTCAGTTGGGGATTTGAGGCATCCTGCCGCC
ATATATTGTGGGGCAGTTGG

Downstream 100 bases:

>100_bases
AGCAATGCGGCAAAACGCAAAGTATAGGCCGGGCATGCTCCCGGCCTTTTTGTTTGTAAACAGTGTTTTAGCCGCAGATG
TTTTGAAGTTGGACCCAGTC

Product: sporulation related

Products: NA

Alternate protein names: Sporulation Domain-Containing Protein; Sporulation Domain Protein; Sporulation And Repeat Protein

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNRARQQLCGAEP
SNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIR
AAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT
IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQG
TGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADR
ALQRIRSAGFSGARLSK

Sequences:

>Translated_417_residues
MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNRARQQLCGAEP
SNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIR
AAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT
IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQG
TGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADR
ALQRIRSAGFSGARLSK
>Mature_417_residues
MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNRARQQLCGAEP
SNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIR
AAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT
IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQG
TGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADR
ALQRIRSAGFSGARLSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45264; Mature: 45264

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDG
CEEEHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCC
NVTWIPRVNRARQQLCGAEPSNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTT
CEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCEEEEC
PTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIRAAAPQPVAAAPAPAAPVVAP
CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT
CCCCCCCCCCCCHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDK
HHHHHHHHCCCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
TPFVLRDAKARYGYLEPRQGTGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEAR
CCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
RIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADRALQRIRSAGFSGARLSK
HHHHHHHHHCCCEEEEHEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDG
CEEEHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCC
NVTWIPRVNRARQQLCGAEPSNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTT
CEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCEEEEC
PTPARTRSIVPPPAVKPERRAEVPTPDARATSLAPARPIRAAAPQPVAAAPAPAAPVVAP
CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APRRPLRNAGDPLDQITPNTRILPVHVYLMRRQSEGLQVPEGYRPAWDDDRLNIRRVEQT
CCCCCCCCCCCCHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQMAQVWSDTLPRRLLEQPLDK
HHHHHHHHCCCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
TPFVLRDAKARYGYLEPRQGTGVATRLSSRAAPDATLPEAVPSKPRYVRAVTLASEEEAR
CCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
RIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADRALQRIRSAGFSGARLSK
HHHHHHHHHCCCEEEEHEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA