| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081393
Identifier: 99081393
GI number: 99081393
Start: 1659441
End: 1659959
Strand: Reverse
Name: 99081393
Synonym: TM1040_1552
Alternate gene names: NA
Gene position: 1659959-1659441 (Counterclockwise)
Preceding gene: 99081394
Following gene: 99081392
Centisome position: 51.86
GC content: 59.73
Gene sequence:
>519_bases ATGAGCCGCCCCCGTCCCGAACCCGTGCAGGTGATCAAGCAACGCCGTGATGCTGCCTTGGCGGCGCTGGTGGAATCGGT GCCCTACATTGGCTTTCTCGGCATCACCTTTGAGCGCCGCGGCGATGAGCTGACGTCGACTATGCATTTTCATGAAAATA TCATCGGCAACCCGATGCTGCCTGCGATCCACGGCGGTGCGACGGCGGCCTTTCTGGAGGTGACCTCCGTTATCACCCTG CAGTGGTTCCATCTGTGGCCCCAATTTGAAAGTGGAGAGCTGGACGTGGAGACAATGGCCGCAGGCCAGATGCCGCGTCT GCCCAAGACCATTGATTTTACCGTCGACTATCTGCGCTCGGGCCTGCCGCGCGACTCTTATGCGCGTGCAACGGTCAATC GCTCTGGACGGCGGTATGCCTCTGTGCATGTGGCCGCATGGCAGGACCATAAGGAAAAGCTCTTTGCACAAGCGACGGGT CATTTCCTGATGCCGCAGGAACGCCCCTCAGGCAACTGA
Upstream 100 bases:
>100_bases TGACGCGCAACGTGGCCTTCGTGCGCGCAGTTGCAACCGATGACGAAACAGAAGTGCCCGTTGCAACCGCCTCCGGGGCC TTCACGCTGGAGCCAAAACG
Downstream 100 bases:
>100_bases TTTCAAAAGGAATACCCTATGTCGGAGGCGTCAGGCCCCATCACCCATTCCCGGGTGCTCAAGATCGCGTTGCCGATTGT TTTGTCCAATGCCACCGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: Thioesterase Family Protein; Phenylacetic Acid Degradation-Related Protein; Thioesterase Superfamily; Phenylacetic Acid Degradation-Like Protein; Thioesterase Family Protein Domain Protein; Protein Possibly Involved In Aromatic Compounds Catabolism
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAAFLEVTSVITL QWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATG HFLMPQERPSGN
Sequences:
>Translated_172_residues MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAAFLEVTSVITL QWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATG HFLMPQERPSGN >Mature_171_residues SRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAAFLEVTSVITLQ WFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATGH FLMPQERPSGN
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19329; Mature: 19198
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPML CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC PAIHGGATAAFLEVTSVITLQWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRS CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHC GLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATGHFLMPQERPSGN CCCCCCHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPML CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC PAIHGGATAAFLEVTSVITLQWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRS CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHC GLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATGHFLMPQERPSGN CCCCCCHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA