| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081374
Identifier: 99081374
GI number: 99081374
Start: 1637844
End: 1639151
Strand: Direct
Name: 99081374
Synonym: TM1040_1533
Alternate gene names: NA
Gene position: 1637844-1639151 (Clockwise)
Preceding gene: 99081373
Following gene: 99081375
Centisome position: 51.17
GC content: 60.93
Gene sequence:
>1308_bases ATGGCAGACGTCGCGCCTTTTCCGGCGCCCGATCAAAGCAGCGCTCAACGCGCCGCCCCCACATCCACCGGCGCCGATGG TGCAGGCCCCCTCGCGGGGGCCACGGCGCAGCTGCGCCCGGATGTGCAGGGGCGCCCGCGCGACCCGCGACTTGATTTTT ATCGCGGCATCGCGATGTTCATCATCCTCTGCGCGCATATCCCGGGCAATCGCTGGACAGGCTGGATTCCGGCCCGCTTT GGCTTTTCCGACGCAACCGAGATCTTTGTGTTCTGCTCCGGCATGGCTTCCGCGATTGCCTTTGGCGGCTCTTTCCAGCG CCACGGCTGGTGGTTGGGCACCGCGCGCGTCGCCTACCGCTGCTGGCAGGTGTTCTGGGCGCATATTGGCCTCTTTTTCT TTGTGGCCATGTCGATGGCCGCGCTCGATCTCTATGGCGGGTTTGAGAAAAGCTACATCGGCTCATTGAACCTGAGACCG TTTTTCAACGATCCCGCAGAGCAGATCGTGGGGATTTTCACCCTCACCTATGTGCCGAACTACTTTGACATTCTGCCGAT GTATCTGGTGGTGCTGGCCTTGATGCCTGCGATTATGAGCGCGCAGAAACTCGGCCTCTGGGCTGTGGCGGGGCTGTCGC TGGCGCTCTGGCTTCTGGCCAACCCTTATGTTGTCGGACTTGGTCCCGAAGGCCTGTCGCTGCCCGCAGAGCCTTGGTCG GACCGCGAGTGGTTCTTCAACCCTTTCGGCTGGCAGCTTTTGTTCTTTACCGGTTTTGCCTTTATGGCAGGCTGGCTTCC CAAACCGCCGGTCAGCCGCGGACTGGCACTGTTAGCGGCCGCCTTCTTGATCCTGTCGATGCCTTTTGGCTCGTGGAAGG TCTTCAGCTGGCTCAACAGTGCGGCCCCCGACCTGGGCGCAACGATCCGCCCTGCATGGGGCATCACCGGAGAGTGGCGC GAGAAAACCGACTTTGGCCTTCTGCGCTATCTGCATTTCTTGTCGCTGGCTTACCTGGCATGGCTTGTGGCCGGTGAGAA CGGGCAAAACCTCGTGGCCCGTGGCAGCTCTTTGGCCGCGCGCTTCTGGGCTCAGATCCTGACGCTCATCACCAAGGTCG GCCAGCAAAGCCTTGCTGTCTTTGTCTTTTCCATGGCGCTTGCCCGTTTCATTGGCGCGGCTCTGGATCAAACCGAGCGC GGCATCCTTGTGACCGCGTTGGCCAATATCACTGGCTTCACTCTCATTATCGGCTGCGCTTTTGCAGCCGGCTGGTTCAA ATCCCAACCCTGGAGACGCAAACGATGA
Upstream 100 bases:
>100_bases AATTATGCGATGGCCCGTCGCGCCTTGATTGCGGCCGCCCAAAGCGAGGGCGGCGCACAGAGCGTCCCGGCGGAGTGATC CTTTAGGAGATTTGAAAAAG
Downstream 100 bases:
>100_bases GCACATTCAGCCGTCGTTCCTTCCTTCAATTCGCCTCTGCCCTGTCACTTGCGGCACTGGCCCCCGCCGCGCGCGCCAGC GCCTCCGAGGAAGCGTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Transmembrane Protein OpgC
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGNRWTGWIPARF GFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRP FFNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWR EKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTER GILVTALANITGFTLIIGCAFAAGWFKSQPWRRKR
Sequences:
>Translated_435_residues MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGNRWTGWIPARF GFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRP FFNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWR EKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTER GILVTALANITGFTLIIGCAFAAGWFKSQPWRRKR >Mature_434_residues ADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGNRWTGWIPARFG FSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRPF FNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWSD REWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWRE KTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERG ILVTALANITGFTLIIGCAFAAGWFKSQPWRRKR
Specific function: Unknown
COG id: COG4645
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47812; Mature: 47681
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMF CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHH IILCAHIPGNRWTGWIPARFGFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYR HHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHH CWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRPFFNDPAEQIVGIFTLTYVPN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC YFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNS CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AAPDLGATIRPAWGITGEWREKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHH RFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERGILVTALANITGFTLIIGCA HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH FAAGWFKSQPWRRKR HHHHHHCCCCCCCCC >Mature Secondary Structure ADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMF CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHH IILCAHIPGNRWTGWIPARFGFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYR HHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHH CWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRPFFNDPAEQIVGIFTLTYVPN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC YFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNS CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AAPDLGATIRPAWGITGEWREKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHH RFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERGILVTALANITGFTLIIGCA HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH FAAGWFKSQPWRRKR HHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA