Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081352

Identifier: 99081352

GI number: 99081352

Start: 1617419

End: 1618765

Strand: Direct

Name: 99081352

Synonym: TM1040_1511

Alternate gene names: NA

Gene position: 1617419-1618765 (Clockwise)

Preceding gene: 99081346

Following gene: 99081353

Centisome position: 50.53

GC content: 61.25

Gene sequence:

>1347_bases
ATGTCCAAGTCAGACGTAAGCCGTCGCGGCCTGCTGAGAACCGGTGCGGTCGCGGGTGCAGGGCTCGCCATGCCGACCAT
CTTTACGGCCCAAAGCGCGCATGCATTCACCAACAACCCCACTGGCGGCACTGTTACACTCGGCTTTAACGTCCCGCAGA
CCGGCCCTTACGCCGATGAAGGTGCGGACGAGTTGCGCGCCTATGAGCTGGCGGTCGAGCACCTGAACGGCGGTGGCGAT
GGCGGCATGCTCACCACCTTCAGCTCCAAGGCTCTGCAGGGCAATGGCATCCTGGGCAAGAAAGTCGAATATGTCACCGG
CGATACCCAGACCAAATCCGATGCGGCGCGCGCTTCTGCCAAGTCCATGATCGAAAAAGACGGTGCGATCATGATCACGG
GCGGCTCGTCTTCGGGTGTGGCTGTGGCCGTGCAGGCGCTCTGCCAAGAGGCAGGCGTAATCTTTATGGCGGGTCTTACC
CACTCCAATGACACCACAGGCAAAGACAAGCGGGCCAATGGTTTCCGCCACTTCTTCAACTCTTACATGTCTGGTGCGGC
GCTGGCGCCGGTGCTGGCGAATGCCTACGGCACCGACCGTAAGGCCTATCACCTGACCGCCGACTACAACTGGGGCTATA
CCACCGAAGAAGCAGTCCGGTCCTCCACCGAAGCGATGGGCTGGGAAACCGTGGCTGCGGTGAAAACACCGCTAACCCAG
ACCGACTTCTCGTCCTATATCGCCCCGGTTCTGCAGTCCGGTGCCGACACGCTGGTTCTGAACCACTACGGCGGCAACAT
GGTGAACTCTCTCACCAACGCGGTGCAGTTCGGCCTGCGCGACAAGCAGGTGAACGGCAAGGACTTCCAGATCGTTGTTC
CGCTCTACTCCCGCCTGATGGCGAAAGGTGCGGGCGCCAACGTGAAGGGCATCTTCGGCTCCACCAACTGGCACTGGTCG
CTGCAGGACGAAGGTTCCAAGGCCTTTGTACGCTCCTTCGGCACCAAATACGGCTTCCCGCCGAGCCAGGCCGCTCACAC
CTGCTATGTGCAGACCCTGCTCTATGCAGACGCGGTTGAACGCGCTGGCTCCTTTGCGCCCTGCGCCGTGGCAGAAGCGC
TCGAGGACTATGAGTTCGACGGTCTGGGCAACGGCAAGACGCTCTATCGTGGCGCCGATCACCAGTGCTTCAAGGACGTG
CTGGTTGTGAAAGGGAAAGAGAACCCGACCTCGGAGTTCGACCTTCTCGAAATCGTCGAAGTCACCCCGGTTGGCCAGGT
CACCTATGACCCGAACCACCCGCAGTTCCAGGGCGGTGCGCTCGGCACCTGCAACAACGGCGCCTAA

Upstream 100 bases:

>100_bases
TTACAACACACCCCCATACTCATTTTGCACAATGTTGCAAGGTGATGCGTGAAAGTGAGGAGTCGCTCATCGCCTTTTTT
AATCCTAGGGAGGAATTTAA

Downstream 100 bases:

>100_bases
TCGCCGGAACGAACGACTTCTAAACACTGTTTGGTGAACAAAAACAGGTAGCGGGCCACTGCAAGACGGCCCGCTGCCCT
GGTCGCCAGCACCCAACGAC

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: UreA/Short-Chain Amide ABC Transporter; Branched-Chain Amino Acid ABC Transporter; ABC-Type Transporter Periplasmic Component; Transporter Signal Peptide Protein; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Amino Acid ABC Transporter Periplasmic Protein; Inner-Membrane Translocator; ABC-Type Transporter Periplasmic; ABC Transporter Periplasmic Protein; ABC Transporter Subunit; Branched Chain Amino Acid ABC Transporter

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYELAVEHLNGGGD
GGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLT
HSNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ
TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWS
LQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDV
LVVKGKENPTSEFDLLEIVEVTPVGQVTYDPNHPQFQGGALGTCNNGA

Sequences:

>Translated_448_residues
MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYELAVEHLNGGGD
GGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLT
HSNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ
TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWS
LQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDV
LVVKGKENPTSEFDLLEIVEVTPVGQVTYDPNHPQFQGGALGTCNNGA
>Mature_447_residues
SKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYELAVEHLNGGGDG
GMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLTH
SNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQT
DFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWSL
QDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVL
VVKGKENPTSEFDLLEIVEVTPVGQVTYDPNHPQFQGGALGTCNNGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47354; Mature: 47223

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADE
CCCCCHHHHCCHHHCCCCCCCCHHCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
GADELRAYELAVEHLNGGGDGGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASA
CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
KSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLTHSNDTTGKDKRANGFRHFFN
HHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCHHHHHHHH
SYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ
HHHCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCH
TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLM
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH
AKGAGANVKGIFGSTNWHWSLQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVE
HCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
RAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVLVVKGKENPTSEFDLLEIVE
HCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCEEEEECCCCCCCCCCCEEEEE
VTPVGQVTYDPNHPQFQGGALGTCNNGA
ECCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADE
CCCCHHHHCCHHHCCCCCCCCHHCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
GADELRAYELAVEHLNGGGDGGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASA
CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
KSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLTHSNDTTGKDKRANGFRHFFN
HHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCHHHHHHHH
SYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ
HHHCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCH
TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLM
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH
AKGAGANVKGIFGSTNWHWSLQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVE
HCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
RAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVLVVKGKENPTSEFDLLEIVE
HCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCEEEEECCCCCCCCCCCEEEEE
VTPVGQVTYDPNHPQFQGGALGTCNNGA
ECCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA