| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081352
Identifier: 99081352
GI number: 99081352
Start: 1617419
End: 1618765
Strand: Direct
Name: 99081352
Synonym: TM1040_1511
Alternate gene names: NA
Gene position: 1617419-1618765 (Clockwise)
Preceding gene: 99081346
Following gene: 99081353
Centisome position: 50.53
GC content: 61.25
Gene sequence:
>1347_bases ATGTCCAAGTCAGACGTAAGCCGTCGCGGCCTGCTGAGAACCGGTGCGGTCGCGGGTGCAGGGCTCGCCATGCCGACCAT CTTTACGGCCCAAAGCGCGCATGCATTCACCAACAACCCCACTGGCGGCACTGTTACACTCGGCTTTAACGTCCCGCAGA CCGGCCCTTACGCCGATGAAGGTGCGGACGAGTTGCGCGCCTATGAGCTGGCGGTCGAGCACCTGAACGGCGGTGGCGAT GGCGGCATGCTCACCACCTTCAGCTCCAAGGCTCTGCAGGGCAATGGCATCCTGGGCAAGAAAGTCGAATATGTCACCGG CGATACCCAGACCAAATCCGATGCGGCGCGCGCTTCTGCCAAGTCCATGATCGAAAAAGACGGTGCGATCATGATCACGG GCGGCTCGTCTTCGGGTGTGGCTGTGGCCGTGCAGGCGCTCTGCCAAGAGGCAGGCGTAATCTTTATGGCGGGTCTTACC CACTCCAATGACACCACAGGCAAAGACAAGCGGGCCAATGGTTTCCGCCACTTCTTCAACTCTTACATGTCTGGTGCGGC GCTGGCGCCGGTGCTGGCGAATGCCTACGGCACCGACCGTAAGGCCTATCACCTGACCGCCGACTACAACTGGGGCTATA CCACCGAAGAAGCAGTCCGGTCCTCCACCGAAGCGATGGGCTGGGAAACCGTGGCTGCGGTGAAAACACCGCTAACCCAG ACCGACTTCTCGTCCTATATCGCCCCGGTTCTGCAGTCCGGTGCCGACACGCTGGTTCTGAACCACTACGGCGGCAACAT GGTGAACTCTCTCACCAACGCGGTGCAGTTCGGCCTGCGCGACAAGCAGGTGAACGGCAAGGACTTCCAGATCGTTGTTC CGCTCTACTCCCGCCTGATGGCGAAAGGTGCGGGCGCCAACGTGAAGGGCATCTTCGGCTCCACCAACTGGCACTGGTCG CTGCAGGACGAAGGTTCCAAGGCCTTTGTACGCTCCTTCGGCACCAAATACGGCTTCCCGCCGAGCCAGGCCGCTCACAC CTGCTATGTGCAGACCCTGCTCTATGCAGACGCGGTTGAACGCGCTGGCTCCTTTGCGCCCTGCGCCGTGGCAGAAGCGC TCGAGGACTATGAGTTCGACGGTCTGGGCAACGGCAAGACGCTCTATCGTGGCGCCGATCACCAGTGCTTCAAGGACGTG CTGGTTGTGAAAGGGAAAGAGAACCCGACCTCGGAGTTCGACCTTCTCGAAATCGTCGAAGTCACCCCGGTTGGCCAGGT CACCTATGACCCGAACCACCCGCAGTTCCAGGGCGGTGCGCTCGGCACCTGCAACAACGGCGCCTAA
Upstream 100 bases:
>100_bases TTACAACACACCCCCATACTCATTTTGCACAATGTTGCAAGGTGATGCGTGAAAGTGAGGAGTCGCTCATCGCCTTTTTT AATCCTAGGGAGGAATTTAA
Downstream 100 bases:
>100_bases TCGCCGGAACGAACGACTTCTAAACACTGTTTGGTGAACAAAAACAGGTAGCGGGCCACTGCAAGACGGCCCGCTGCCCT GGTCGCCAGCACCCAACGAC
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: UreA/Short-Chain Amide ABC Transporter; Branched-Chain Amino Acid ABC Transporter; ABC-Type Transporter Periplasmic Component; Transporter Signal Peptide Protein; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Amino Acid ABC Transporter Periplasmic Protein; Inner-Membrane Translocator; ABC-Type Transporter Periplasmic; ABC Transporter Periplasmic Protein; ABC Transporter Subunit; Branched Chain Amino Acid ABC Transporter
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYELAVEHLNGGGD GGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLT HSNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWS LQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDV LVVKGKENPTSEFDLLEIVEVTPVGQVTYDPNHPQFQGGALGTCNNGA
Sequences:
>Translated_448_residues MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYELAVEHLNGGGD GGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLT HSNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWS LQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDV LVVKGKENPTSEFDLLEIVEVTPVGQVTYDPNHPQFQGGALGTCNNGA >Mature_447_residues SKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYELAVEHLNGGGDG GMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLTH SNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQT DFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWSL QDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVL VVKGKENPTSEFDLLEIVEVTPVGQVTYDPNHPQFQGGALGTCNNGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47354; Mature: 47223
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADE CCCCCHHHHCCHHHCCCCCCCCHHCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCC GADELRAYELAVEHLNGGGDGGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASA CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH KSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLTHSNDTTGKDKRANGFRHFFN HHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCHHHHHHHH SYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ HHHCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCH TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLM HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH AKGAGANVKGIFGSTNWHWSLQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVE HCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH RAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVLVVKGKENPTSEFDLLEIVE HCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCEEEEECCCCCCCCCCCEEEEE VTPVGQVTYDPNHPQFQGGALGTCNNGA ECCCCEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADE CCCCHHHHCCHHHCCCCCCCCHHCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCC GADELRAYELAVEHLNGGGDGGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASA CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH KSMIEKDGAIMITGGSSSGVAVAVQALCQEAGVIFMAGLTHSNDTTGKDKRANGFRHFFN HHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCHHHHHHHH SYMSGAALAPVLANAYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVAAVKTPLTQ HHHCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCH TDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLRDKQVNGKDFQIVVPLYSRLM HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH AKGAGANVKGIFGSTNWHWSLQDEGSKAFVRSFGTKYGFPPSQAAHTCYVQTLLYADAVE HCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH RAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVLVVKGKENPTSEFDLLEIVE HCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCEEEEECCCCCCCCCCCEEEEE VTPVGQVTYDPNHPQFQGGALGTCNNGA ECCCCEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA