| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is adk [H]
Identifier: 99081331
GI number: 99081331
Start: 1595898
End: 1596581
Strand: Direct
Name: adk [H]
Synonym: TM1040_1490
Alternate gene names: 99081331
Gene position: 1595898-1596581 (Clockwise)
Preceding gene: 99081330
Following gene: 99081332
Centisome position: 49.86
GC content: 62.43
Gene sequence:
>684_bases ATGACCACAGATGTTATGACCCGCCCCGCGGTACTGATCCTGCTGGGCCCTCCGGGGGCTGGCAAAGGCACGCAGGCGCG GATGCTTCAGGAAAAATACGGCCTTGTGCAGCTTTCCACCGGGGATCTTCTGCGTGCGGCCGTGGCTGCGGGCACCGATG CGGGCAAACAGGCCAAGGCGGTGATGGATGCGGGCGGTCTGGTCTCTGACGAGATCGTCATCGCCATCCTCAAGGACCGG ATGAACGACGCAGATTGCCGCAACGGGGTCATCCTCGACGGCTTCCCGCGCACAACCGTGCAGGCCAAAGCGCTGGATGG GCTGCTGGCCTCGACCGGACAGCGGATCAACGCAGCAATCAGCCTCGAAGTGAATGACAGCGCGATGGTGACACGGATCT CCGGGCGCTCCACCTGCGCGGATTGCGGAGAAGGCTATCACGACACCTTCAAGCCGCCTATGCCGGGTGAAGTCTGCGCC AAATGCGGCGGTGAAACCCTCACGCGGCGCGCTGATGATCGGGCAGAGACAGTGGCCAGCCGGCTTGAGGCCTATCATGC GCAGACCGCACCGCTGATCGCCTATTACCAAGAGGCCGGCGTGCTGAAATCCGTGGATGCAATGGCGGAAATCAGCAGCG TTGCGACGCAGATATCCTCTGTGGTGGAAACGATCCTGCACTAA
Upstream 100 bases:
>100_bases GGAGAATGATTTTGGCAGCCTCGGCGACACCTCGACCCTCGCGGATCCTTCGGTCGTCGATGATCTGATCTCCAACCGTG CCAACAAGGGTTAAGCGACC
Downstream 100 bases:
>100_bases GGTCGCCCTCTGCGCGAGAGCATCAGATGCCTCCGCCCCGAGGGTCGGAGGCATCTGATTTATTTTCTTTTGCATCCAAG GGCAGAGGTTGAAATAAGGG
Product: adenylate kinase
Products: NA
Alternate protein names: AK; ATP-AMP transphosphorylase [H]
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MTTDVMTRPAVLILLGPPGAGKGTQARMLQEKYGLVQLSTGDLLRAAVAAGTDAGKQAKAVMDAGGLVSDEIVIAILKDR MNDADCRNGVILDGFPRTTVQAKALDGLLASTGQRINAAISLEVNDSAMVTRISGRSTCADCGEGYHDTFKPPMPGEVCA KCGGETLTRRADDRAETVASRLEAYHAQTAPLIAYYQEAGVLKSVDAMAEISSVATQISSVVETILH
Sequences:
>Translated_227_residues MTTDVMTRPAVLILLGPPGAGKGTQARMLQEKYGLVQLSTGDLLRAAVAAGTDAGKQAKAVMDAGGLVSDEIVIAILKDR MNDADCRNGVILDGFPRTTVQAKALDGLLASTGQRINAAISLEVNDSAMVTRISGRSTCADCGEGYHDTFKPPMPGEVCA KCGGETLTRRADDRAETVASRLEAYHAQTAPLIAYYQEAGVLKSVDAMAEISSVATQISSVVETILH >Mature_226_residues TTDVMTRPAVLILLGPPGAGKGTQARMLQEKYGLVQLSTGDLLRAAVAAGTDAGKQAKAVMDAGGLVSDEIVIAILKDRM NDADCRNGVILDGFPRTTVQAKALDGLLASTGQRINAAISLEVNDSAMVTRISGRSTCADCGEGYHDTFKPPMPGEVCAK CGGETLTRRADDRAETVASRLEAYHAQTAPLIAYYQEAGVLKSVDAMAEISSVATQISSVVETILH
Specific function: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth [H]
COG id: COG0563
COG function: function code F; Adenylate kinase and related kinases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenylate kinase family [H]
Homologues:
Organism=Homo sapiens, GI4502013, Length=198, Percent_Identity=45.4545454545455, Blast_Score=192, Evalue=3e-49, Organism=Homo sapiens, GI7524346, Length=195, Percent_Identity=45.6410256410256, Blast_Score=191, Evalue=4e-49, Organism=Homo sapiens, GI19923437, Length=212, Percent_Identity=33.9622641509434, Blast_Score=125, Evalue=3e-29, Organism=Homo sapiens, GI310110345, Length=195, Percent_Identity=34.3589743589744, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI53832003, Length=195, Percent_Identity=34.3589743589744, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI8051579, Length=195, Percent_Identity=34.3589743589744, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI53832001, Length=195, Percent_Identity=34.3589743589744, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI4502011, Length=217, Percent_Identity=31.3364055299539, Blast_Score=113, Evalue=1e-25, Organism=Homo sapiens, GI28144899, Length=228, Percent_Identity=29.8245614035088, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI28144897, Length=228, Percent_Identity=29.8245614035088, Blast_Score=103, Evalue=9e-23, Organism=Homo sapiens, GI22749187, Length=189, Percent_Identity=32.8042328042328, Blast_Score=93, Evalue=2e-19, Organism=Escherichia coli, GI1786680, Length=216, Percent_Identity=48.6111111111111, Blast_Score=193, Evalue=6e-51, Organism=Caenorhabditis elegans, GI17552384, Length=222, Percent_Identity=43.2432432432432, Blast_Score=186, Evalue=7e-48, Organism=Caenorhabditis elegans, GI17567503, Length=206, Percent_Identity=30.5825242718447, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17550688, Length=217, Percent_Identity=29.0322580645161, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17533833, Length=214, Percent_Identity=26.1682242990654, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17537943, Length=190, Percent_Identity=30, Blast_Score=84, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6320432, Length=208, Percent_Identity=45.6730769230769, Blast_Score=198, Evalue=7e-52, Organism=Saccharomyces cerevisiae, GI6321018, Length=195, Percent_Identity=35.3846153846154, Blast_Score=123, Evalue=3e-29, Organism=Saccharomyces cerevisiae, GI6322828, Length=191, Percent_Identity=27.7486910994764, Blast_Score=79, Evalue=5e-16, Organism=Drosophila melanogaster, GI22026816, Length=211, Percent_Identity=46.4454976303318, Blast_Score=201, Evalue=2e-52, Organism=Drosophila melanogaster, GI17737899, Length=191, Percent_Identity=37.696335078534, Blast_Score=129, Evalue=1e-30, Organism=Drosophila melanogaster, GI24645822, Length=191, Percent_Identity=37.696335078534, Blast_Score=129, Evalue=1e-30, Organism=Drosophila melanogaster, GI17647141, Length=218, Percent_Identity=28.4403669724771, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24663208, Length=217, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI221459597, Length=221, Percent_Identity=25.7918552036199, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI21356893, Length=221, Percent_Identity=25.7918552036199, Blast_Score=87, Evalue=7e-18,
Paralogues:
None
Copy number: 1640 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006259 - InterPro: IPR000850 - InterPro: IPR007862 [H]
Pfam domain/function: PF00406 ADK; PF05191 ADK_lid [H]
EC number: =2.7.4.3 [H]
Molecular weight: Translated: 23767; Mature: 23636
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS00113 ADENYLATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTDVMTRPAVLILLGPPGAGKGTQARMLQEKYGLVQLSTGDLLRAAVAAGTDAGKQAKA CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCHHHHH VMDAGGLVSDEIVIAILKDRMNDADCRNGVILDGFPRTTVQAKALDGLLASTGQRINAAI HHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE SLEVNDSAMVTRISGRSTCADCGEGYHDTFKPPMPGEVCAKCGGETLTRRADDRAETVAS EEEECCCEEEEEECCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHH RLEAYHAQTAPLIAYYQEAGVLKSVDAMAEISSVATQISSVVETILH HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTDVMTRPAVLILLGPPGAGKGTQARMLQEKYGLVQLSTGDLLRAAVAAGTDAGKQAKA CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCHHHHH VMDAGGLVSDEIVIAILKDRMNDADCRNGVILDGFPRTTVQAKALDGLLASTGQRINAAI HHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE SLEVNDSAMVTRISGRSTCADCGEGYHDTFKPPMPGEVCAKCGGETLTRRADDRAETVAS EEEECCCEEEEEECCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHH RLEAYHAQTAPLIAYYQEAGVLKSVDAMAEISSVATQISSVVETILH HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA