| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is acsA [H]
Identifier: 99081330
GI number: 99081330
Start: 1593933
End: 1595891
Strand: Direct
Name: acsA [H]
Synonym: TM1040_1489
Alternate gene names: 99081330
Gene position: 1593933-1595891 (Clockwise)
Preceding gene: 99081329
Following gene: 99081331
Centisome position: 49.8
GC content: 60.08
Gene sequence:
>1959_bases ATGACCACGCCCGAGAGCGCAGTTTACCCACCGTCTGAGGACATCGTCAAAAACGCCCATGTCAATGCGGCAAAATACGA CGAGATGTACGCGCAATCCCTTGAGAACCCAGAGAAGTTCTGGGCAGAGCAGGCTGAACGCATCGACTGGATCAAGCCGT TCACCAAGGTCAAGAATGTGTCCTATGATTTTGGCAACGTGGACATCAAATGGTTCGAGGACGGTCAGCTGAACGTCGCA GCCAACTGCATCGACCGCCATCTGGAGACCCGTGGCGATCAGACCGCGATCATCTGGGAGCCTGATGATCCATCCGATGA GGCCAAGCACATCTCCTACAAGGAGCTGCACCTCAGAACCTGCCGCATGGCCAACATCCTCGAGAGCATGGGTGTCGGCA AAGGCGACCGAGTGGTGATCTACCTGCCCATGATCCCCGAAGCCGCCTATGCCATGCTGGCCTGCGCGCGCATCGGTGCG ATCCACTCAATTGTTTTTGCAGGGTTTTCACCGGACGCCCTGGCGGCGCGGATTAATGGCTGCGACGCCAAGGTTGTGAT CACCGCCGACGAGGCCCCGCGCGGAGGGCGCAAGACGCCTCTGAAGTCGAACGCCGACGCCGCCCTGCTGCACTGCAAGG AAAGCGTGAAGTGCCTCGTGGTGCGCCGCACCGGCGGTCAGACCACATGGATCGACGGTCGCGACCACGACTATAACGAG ATGGCGCTGGAGGCGAATGACTACTGCAAACCCGCCGCAATGGACGCAGAGGATCCGCTGTTCATTCTCTACACCTCCGG TTCGACCGGGCAGCCCAAGGGCGTTGTACACACCACCGGTGGCTACCTCACCTATGCCGCACTCACCCATGAGGTGACGT TTGATTACCACGATGGCGACATCTACTGGTGTACGGCCGATGTGGGCTGGGTCACGGGCCATAGCTATATCGTGTATGGC CCCCTCGCCAATGGCGCCACCACATTGATGTTTGAGGGCGTGCCCACCTACCCCGATGCGGGCCGGTTCTGGGCGGTCTG CGAAAAGCACAAGGTCAACCAGTTCTACACGGCACCGACGGCGATCCGCGCCCTGATGGGGCAAGGGACGGAATTTGTCG AGAAATACGACCTCTCCGACCTGAAGCTCCTCGGCACAGTGGGCGAGCCCATCAACCCGGAGGCCTGGAACTGGTACAAT GATGTGGTCGGCAAGAGCAAATGCCCGATCGTCGATACCTGGTGGCAGACTGAGACCGGCGGACACCTGATGACCCCGCT GCCTGGCGCCCACGCCACCAAACCGGGTGCTGCGATGAAGCCCTTCTTTGGCGTGGAGCCTGTCGTCCTCGATCCGCAGT CGGGCGCTGAAATCGACGGCAACGGCGTTGAGGGCGTGCTCTGTATCAAGGACAGCTGGCCGGGCCAGATGCGTACAGTC TGGGGCGATCACGAACGTTTCGAGAAGACCTACTTCTCTGATTACAAAGGCTATTATTTCACGGGTGATGGGTGCCGCCG CGATGCCGACGGCGACTATTGGATCACCGGGCGCGTGGACGATGTGATCAACGTCTCTGGTCACCGCATGGGCACCGCCG AGGTGGAAAGCGCGCTTGTCGCACATGCCGCCGTGGCCGAAGCCGCTGTTGTGGGCTACCCGCATGAGATCAAGGGCCAG GGCATCTACTGCTATGTCACCCTGATGAATGATCGCGAGCCTTCTGACGAGCTCCTGAAGGAGCTGCGTCAGTGGGTGCG CACCGAGATTGGCCCCATTGCATCGCCTGATGTAATCCAATGGGCGCCTGGCCTGCCGAAGACACGTTCGGGCAAGATCA TGCGCCGCATCCTGCGTAAAATTGCGGAGAATGATTTTGGCAGCCTCGGCGACACCTCGACCCTCGCGGATCCTTCGGTC GTCGATGATCTGATCTCCAACCGTGCCAACAAGGGTTAA
Upstream 100 bases:
>100_bases ACTTCGCTTATTATCACGCCCAAGGTTGGAGAAGGTTTGACTCTTGGCGCACTTCCATGTGGAGATCGCGCCCAAGAGAA TTTTGGAGGGAGGACATTCC
Downstream 100 bases:
>100_bases GCGACCATGACCACAGATGTTATGACCCGCCCCGCGGTACTGATCCTGCTGGGCCCTCCGGGGGCTGGCAAAGGCACGCA GGCGCGGATGCTTCAGGAAA
Product: acetyl-coenzyme A synthetase
Products: NA
Alternate protein names: Acetate--CoA ligase; Acyl-activating enzyme [H]
Number of amino acids: Translated: 652; Mature: 651
Protein sequence:
>652_residues MTTPESAVYPPSEDIVKNAHVNAAKYDEMYAQSLENPEKFWAEQAERIDWIKPFTKVKNVSYDFGNVDIKWFEDGQLNVA ANCIDRHLETRGDQTAIIWEPDDPSDEAKHISYKELHLRTCRMANILESMGVGKGDRVVIYLPMIPEAAYAMLACARIGA IHSIVFAGFSPDALAARINGCDAKVVITADEAPRGGRKTPLKSNADAALLHCKESVKCLVVRRTGGQTTWIDGRDHDYNE MALEANDYCKPAAMDAEDPLFILYTSGSTGQPKGVVHTTGGYLTYAALTHEVTFDYHDGDIYWCTADVGWVTGHSYIVYG PLANGATTLMFEGVPTYPDAGRFWAVCEKHKVNQFYTAPTAIRALMGQGTEFVEKYDLSDLKLLGTVGEPINPEAWNWYN DVVGKSKCPIVDTWWQTETGGHLMTPLPGAHATKPGAAMKPFFGVEPVVLDPQSGAEIDGNGVEGVLCIKDSWPGQMRTV WGDHERFEKTYFSDYKGYYFTGDGCRRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAAVAEAAVVGYPHEIKGQ GIYCYVTLMNDREPSDELLKELRQWVRTEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIAENDFGSLGDTSTLADPSV VDDLISNRANKG
Sequences:
>Translated_652_residues MTTPESAVYPPSEDIVKNAHVNAAKYDEMYAQSLENPEKFWAEQAERIDWIKPFTKVKNVSYDFGNVDIKWFEDGQLNVA ANCIDRHLETRGDQTAIIWEPDDPSDEAKHISYKELHLRTCRMANILESMGVGKGDRVVIYLPMIPEAAYAMLACARIGA IHSIVFAGFSPDALAARINGCDAKVVITADEAPRGGRKTPLKSNADAALLHCKESVKCLVVRRTGGQTTWIDGRDHDYNE MALEANDYCKPAAMDAEDPLFILYTSGSTGQPKGVVHTTGGYLTYAALTHEVTFDYHDGDIYWCTADVGWVTGHSYIVYG PLANGATTLMFEGVPTYPDAGRFWAVCEKHKVNQFYTAPTAIRALMGQGTEFVEKYDLSDLKLLGTVGEPINPEAWNWYN DVVGKSKCPIVDTWWQTETGGHLMTPLPGAHATKPGAAMKPFFGVEPVVLDPQSGAEIDGNGVEGVLCIKDSWPGQMRTV WGDHERFEKTYFSDYKGYYFTGDGCRRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAAVAEAAVVGYPHEIKGQ GIYCYVTLMNDREPSDELLKELRQWVRTEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIAENDFGSLGDTSTLADPSV VDDLISNRANKG >Mature_651_residues TTPESAVYPPSEDIVKNAHVNAAKYDEMYAQSLENPEKFWAEQAERIDWIKPFTKVKNVSYDFGNVDIKWFEDGQLNVAA NCIDRHLETRGDQTAIIWEPDDPSDEAKHISYKELHLRTCRMANILESMGVGKGDRVVIYLPMIPEAAYAMLACARIGAI HSIVFAGFSPDALAARINGCDAKVVITADEAPRGGRKTPLKSNADAALLHCKESVKCLVVRRTGGQTTWIDGRDHDYNEM ALEANDYCKPAAMDAEDPLFILYTSGSTGQPKGVVHTTGGYLTYAALTHEVTFDYHDGDIYWCTADVGWVTGHSYIVYGP LANGATTLMFEGVPTYPDAGRFWAVCEKHKVNQFYTAPTAIRALMGQGTEFVEKYDLSDLKLLGTVGEPINPEAWNWYND VVGKSKCPIVDTWWQTETGGHLMTPLPGAHATKPGAAMKPFFGVEPVVLDPQSGAEIDGNGVEGVLCIKDSWPGQMRTVW GDHERFEKTYFSDYKGYYFTGDGCRRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAAVAEAAVVGYPHEIKGQG IYCYVTLMNDREPSDELLKELRQWVRTEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIAENDFGSLGDTSTLADPSVV DDLISNRANKG
Specific function: Enables The Cell To Use Acetate During Aerobic Growth To Generate Energy Via The Tca Cycle, And Biosynthetic Compounds Via The Glyoxylate Shunt. Acetylates Chey, The Response Regulator Involved In Flagellar Movement And Chemotaxis. [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI8923896, Length=674, Percent_Identity=52.5222551928783, Blast_Score=702, Evalue=0.0, Organism=Homo sapiens, GI253970489, Length=687, Percent_Identity=51.528384279476, Blast_Score=700, Evalue=0.0, Organism=Homo sapiens, GI28416953, Length=624, Percent_Identity=50.9615384615385, Blast_Score=653, Evalue=0.0, Organism=Homo sapiens, GI13375727, Length=631, Percent_Identity=37.7179080824089, Blast_Score=404, Evalue=1e-112, Organism=Homo sapiens, GI38505220, Length=512, Percent_Identity=28.90625, Blast_Score=182, Evalue=1e-45, Organism=Homo sapiens, GI42544132, Length=519, Percent_Identity=28.9017341040462, Blast_Score=180, Evalue=4e-45, Organism=Homo sapiens, GI122937307, Length=551, Percent_Identity=26.8602540834846, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI115511026, Length=555, Percent_Identity=27.9279279279279, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI31982927, Length=619, Percent_Identity=23.4248788368336, Blast_Score=164, Evalue=3e-40, Organism=Homo sapiens, GI58082049, Length=521, Percent_Identity=27.063339731286, Blast_Score=156, Evalue=6e-38, Organism=Homo sapiens, GI157311624, Length=522, Percent_Identity=27.0114942528736, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI157311622, Length=522, Percent_Identity=27.0114942528736, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI187761345, Length=389, Percent_Identity=27.7634961439589, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI187761343, Length=389, Percent_Identity=27.7634961439589, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI42544134, Length=332, Percent_Identity=25.6024096385542, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI195947378, Length=466, Percent_Identity=25.3218884120172, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI156151445, Length=394, Percent_Identity=24.3654822335025, Blast_Score=70, Evalue=7e-12, Organism=Escherichia coli, GI1790505, Length=637, Percent_Identity=62.7943485086342, Blast_Score=833, Evalue=0.0, Organism=Escherichia coli, GI1786529, Length=631, Percent_Identity=38.351822503962, Blast_Score=419, Evalue=1e-118, Organism=Escherichia coli, GI145693145, Length=513, Percent_Identity=24.9512670565302, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1788107, Length=569, Percent_Identity=24.4288224956063, Blast_Score=86, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71982997, Length=662, Percent_Identity=49.2447129909366, Blast_Score=612, Evalue=1e-175, Organism=Caenorhabditis elegans, GI71983001, Length=662, Percent_Identity=49.2447129909366, Blast_Score=612, Evalue=1e-175, Organism=Caenorhabditis elegans, GI17569507, Length=595, Percent_Identity=22.1848739495798, Blast_Score=127, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17559526, Length=529, Percent_Identity=24.007561436673, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17557194, Length=556, Percent_Identity=22.6618705035971, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538037, Length=176, Percent_Identity=30.1136363636364, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560140, Length=392, Percent_Identity=21.6836734693878, Blast_Score=76, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6323182, Length=640, Percent_Identity=50.3125, Blast_Score=640, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6319264, Length=638, Percent_Identity=47.8056426332288, Blast_Score=601, Evalue=1e-172, Organism=Saccharomyces cerevisiae, GI6319699, Length=386, Percent_Identity=23.3160621761658, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24667955, Length=665, Percent_Identity=55.0375939849624, Blast_Score=715, Evalue=0.0, Organism=Drosophila melanogaster, GI62472339, Length=564, Percent_Identity=58.8652482269503, Blast_Score=649, Evalue=0.0, Organism=Drosophila melanogaster, GI24667959, Length=522, Percent_Identity=60.1532567049808, Blast_Score=611, Evalue=1e-175, Organism=Drosophila melanogaster, GI21355225, Length=636, Percent_Identity=34.4339622641509, Blast_Score=353, Evalue=2e-97, Organism=Drosophila melanogaster, GI21355181, Length=553, Percent_Identity=24.0506329113924, Blast_Score=109, Evalue=6e-24, Organism=Drosophila melanogaster, GI18859661, Length=177, Percent_Identity=30.5084745762712, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011904 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.1 [H]
Molecular weight: Translated: 71977; Mature: 71845
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPESAVYPPSEDIVKNAHVNAAKYDEMYAQSLENPEKFWAEQAERIDWIKPFTKVKNV CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC SYDFGNVDIKWFEDGQLNVAANCIDRHLETRGDQTAIIWEPDDPSDEAKHISYKELHLRT CCCCCCEEEEEEECCCEEEHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCHHHHHHHH CRMANILESMGVGKGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARING HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECC CDAKVVITADEAPRGGRKTPLKSNADAALLHCKESVKCLVVRRTGGQTTWIDGRDHDYNE CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEECCCCCCCCC MALEANDYCKPAAMDAEDPLFILYTSGSTGQPKGVVHTTGGYLTYAALTHEVTFDYHDGD EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCEEEEEEEEEEEEEEEECCE IYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWAVCEKHKVNQFYTAPT EEEEECCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEHHHHCCCCEEECCHH AIRALMGQGTEFVEKYDLSDLKLLGTVGEPINPEAWNWYNDVVGKSKCPIVDTWWQTETG HHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC GHLMTPLPGAHATKPGAAMKPFFGVEPVVLDPQSGAEIDGNGVEGVLCIKDSWPGQMRTV CEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCEEEEEECCCCCCEEEE WGDHERFEKTYFSDYKGYYFTGDGCRRDADGDYWITGRVDDVINVSGHRMGTAEVESALV CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHH AHAAVAEAAVVGYPHEIKGQGIYCYVTLMNDREPSDELLKELRQWVRTEIGPIASPDVIQ HHHHHHHHHHCCCCHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE WAPGLPKTRSGKIMRRILRKIAENDFGSLGDTSTLADPSVVDDLISNRANKG ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure TTPESAVYPPSEDIVKNAHVNAAKYDEMYAQSLENPEKFWAEQAERIDWIKPFTKVKNV CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC SYDFGNVDIKWFEDGQLNVAANCIDRHLETRGDQTAIIWEPDDPSDEAKHISYKELHLRT CCCCCCEEEEEEECCCEEEHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCHHHHHHHH CRMANILESMGVGKGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARING HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECC CDAKVVITADEAPRGGRKTPLKSNADAALLHCKESVKCLVVRRTGGQTTWIDGRDHDYNE CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEECCCCCCCCC MALEANDYCKPAAMDAEDPLFILYTSGSTGQPKGVVHTTGGYLTYAALTHEVTFDYHDGD EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCEEEEEEEEEEEEEEEECCE IYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWAVCEKHKVNQFYTAPT EEEEECCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEHHHHCCCCEEECCHH AIRALMGQGTEFVEKYDLSDLKLLGTVGEPINPEAWNWYNDVVGKSKCPIVDTWWQTETG HHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC GHLMTPLPGAHATKPGAAMKPFFGVEPVVLDPQSGAEIDGNGVEGVLCIKDSWPGQMRTV CEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCEEEEEECCCCCCEEEE WGDHERFEKTYFSDYKGYYFTGDGCRRDADGDYWITGRVDDVINVSGHRMGTAEVESALV CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHH AHAAVAEAAVVGYPHEIKGQGIYCYVTLMNDREPSDELLKELRQWVRTEIGPIASPDVIQ HHHHHHHHHHCCCCHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE WAPGLPKTRSGKIMRRILRKIAENDFGSLGDTSTLADPSVVDDLISNRANKG ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9256491 [H]