| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081329
Identifier: 99081329
GI number: 99081329
Start: 1591016
End: 1593580
Strand: Direct
Name: 99081329
Synonym: TM1040_1488
Alternate gene names: NA
Gene position: 1591016-1593580 (Clockwise)
Preceding gene: 99081328
Following gene: 99081330
Centisome position: 49.7
GC content: 59.65
Gene sequence:
>2565_bases ATGGCAACGATGAACTCAGGCCTCGGCGGTGCGACGGGGTATGGTGAAAACAGCTTTGTCACGAATGGGCCGGACAGCGG CACCCTCGATGATGGCAGCGTTTATGTTGATATCACCTCGGTGTTCGGCCCTGGAGGGATCACGCTCTTTGGCCAGAACT ATACCGGGTTCAACGTCGGCACCAACGGTGTCATTGGTTTTGATTGGGACAGCACCACCTACAACCCCGAGGGCCTCGAA GGTTTTAACCAAGGCCCACTGATCGCACCGCTGTGGACCGATATGGATCTCAGCCAGGGCGGCGACATCCTGTGGGATCT CGACACGGTCAACGGCACGGTCACGATCACCTGGCTCGATGTTGCCCCCTCTTCGGGCGCCGGCACGAACTCCTTTCAGG TTGTGCTGACCGATACAGGCGGCGGCAACTTTGATCTCGAGTTTATCTATGAGGACATCCAGTATGGTGATGGCGACACG CTCGGCAACAGCGTCGGCCTGACCGATGGCAATGGAAATGTCTACGAACTCGAAGGCTCACGCGATACCAATGACGCCAC CCAATACGAGACCACAAGCTTTGACAGTGGCCCGGCCCCGGGTCATTTCTCGACCTCGGTTGTAGATGGCACACCGGACG TCTATTCCATCGACGGCACCTCCGGCGCGGACAACATGGACGTCGGCTATACCGACGCCGATGGGCAGGACATCACCAAT CAGGATGACTACATCCTTGCTGGCGACGGCAATGACACCATTCGCGGAGGCGAGGGAGACGACACGATTGTCGGCGGCGC TGGCGATGATGTGATCTACAGCGGCAGCGATTCAGACGCTGCGGCGCCGACCTATGTGCAGGTGTACAACGGCGACAATT ATCACGGCACAACCGGTCAGGACTTCTATCACTGGAATGCGGAAACAGGCAGCAACGCCGTCATCCGCATGAACAATACG CCCACCGAGTCGGGCTCTGGCGATGGCGAGGCTGACTATGTGGTTGTCGGAACCACCAACAACACCGGCACCCTGACCAT TGGCGACTTTGACGTCGGCAATGACCGGATCGTACTGCCCGAGGCCTATGCTTCGATTTCGATGACCAACGCGTCCTCGC CGACAGATTATTATTCCGACATTACAATTACATATGCGAACGGCAATACGCAGAGCTTTGTGATCTATCACGACGGCTCC ACGCCGCTTACTGCCAGCGAGGTCTTCACCACCGAGGTTCCGACTGTCACTGCAAGCGACAACGATCAGCTCATCGGGGG CGAAGGCGACGACACTTTTATCCTCGAAGATCACTCCGGGAATGACACGATCGATGGGGGTGCGGGTGAAGGCGATCACA TTGACGCGTCCAACCTGTCTGGGCCGGTTTCGGTTACCTATTCGGGGGATGAGGCCGGGGACATCGTCAGCGGGTCGGAT ACGATCACCTTCAGCGACATCGAGCAGATCACCCTGACCAATCAGGCTGATTTTTTTGATGCCAGCGCTGCTGCCACCGG CGTATCTCTGGATGCAGGGACCGGGGATGACACCATCATCGGCTCCAGCGGCAATGACACGCTCTCCAGCGGCATCGGCC ATGACACCATCACCGGGGGCCTGGGTGATGACGTGATGACAAGCGCCGGTGGGGAGGACCTCTTTGTCCTTACCACCAGC GGCGGGCGCGACACCATCACCGATTTTGGTACCGGCGATCTGGATGGCGATGGGCGCTTCAACGACCAGCTCGATGTGTC CAATCTCTCGGGCGGTACAGGACCTGGCGGCAGCGTCACACGAAACGATGTTGTCGTCAGCGACGATGGCAGCGGCAATG CGGTGCTGACGTTCCCGGATGGCGAGCAGCTGGTGCTCCTTGGCGTGCCACCGACCTTTATGTCTGCCCCGGCCAATCTC TATTCTGCGGGCATTCCCTGTTTCACCACGGGCACACTGATCGACACTGCGACGGGGCCACGTCCGGTTGAGACACTCCG GGTCGGCGATCTGATGCAGACGGCTGATGAGGGCTGCCAACCCGTGATCTGGATTGGAACAACCCATGTTCCCCATAGCG CACTCATGTCCAATCCGCGGCTGAGGCCCATCACACTGCACCCAGGCGGGAGCCTTCAACTGGCGCAGCCCATGACGGTG TCGCGTCAGCACCGGTTCGTGTTCGCCGACCCACAGGATCGGACCGAGCGTTTCCTGCGCGCCAATCAACTCCTTCAGGT AGCGCCGGATCAGGTCAGTGTTGATTGCCCTCTAGGCGGCGTCACCTATGTTCATGTCCTGCTTGAGCGGCACCAGGTCT TGTTTTCCGGCGGCGTCGCAACGGAGAGCTTTTTCCCCGGCCCCTGGTCTTTGCGCGGGCTCTCGCCTCGCTCCGTGGCA AAGCTCGCCGCTTTGCTGCCCCGGTTGCGCTATTTGCACGGGTTGCCCCCCAAACTCGCGAGAATGGCGACCGAGCAGGT CTATGCTCCGCTGGCACGCGATGAAATCAGCACCGCAGAGTTGCGAGAGAGACTGCGCGCCACCCGTCTGAAACAAAGCG CCTGA
Upstream 100 bases:
>100_bases TCAACAGGAACTTAAGAATTTTCGCATAAAACGATGATGAGCCCTGTTCAATTGGCCCGGTAACAAGAAGCTGCCCCTCT TGCAGGGGCTGGAAGAGTAA
Downstream 100 bases:
>100_bases AACGGTGCCCAGTCGCGGCAGGCCGCCACAGGGCCACATTCTGCGCGCAAACGCCGCAGCCCACTCGAACACAATCCCAA CTGATACCGGCGACGCCAAT
Product: hemolysin-type calcium-binding region
Products: NA
Alternate protein names: Type I Secretion Target Repeat-Containing Protein; YD Repeat Protein; Nidogen Extracellular Region; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase
Number of amino acids: Translated: 854; Mature: 853
Protein sequence:
>854_residues MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWDSTTYNPEGLE GFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDT LGNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNT PTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGS TPLTASEVFTTEVPTVTASDNDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTS GGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANL YSAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVATESFFPGPWSLRGLSPRSVA KLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAELRERLRATRLKQSA
Sequences:
>Translated_854_residues MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWDSTTYNPEGLE GFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDT LGNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNT PTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGS TPLTASEVFTTEVPTVTASDNDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTS GGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANL YSAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVATESFFPGPWSLRGLSPRSVA KLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAELRERLRATRLKQSA >Mature_853_residues ATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWDSTTYNPEGLEG FNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDTL GNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITNQ DDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNTP TESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGST PLTASEVFTTEVPTVTASDNDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSDT ITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTSG GRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANLY SAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTVS RQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVATESFFPGPWSLRGLSPRSVAK LAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAELRERLRATRLKQSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89160; Mature: 89029
Theoretical pI: Translated: 3.71; Mature: 3.71
Prosite motif: PS00330 HEMOLYSIN_CALCIUM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVG CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCC TNGVIGFDWDSTTYNPEGLEGFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLD CCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEE VAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDTLGNSVGLTDGNGNVYELEGS ECCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEECCC RDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN CCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCC QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQ CCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCC DFYHWNAETGSNAVIRMNNTPTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLP CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEECEECCCCEEECC EAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGSTPLTASEVFTTEVPTVTASD CCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHEEEECCCEEEECC NDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD CCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCC TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGG EEEECCCEEEEEECCCCCCCCCHHHCCEEEECCCCCCEEEECCCCCHHHCCCCCCCCCCC LGDDVMTSAGGEDLFVLTTSGGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVT CCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC RNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANLYSAGIPCFTTGTLIDTATGP CCCEEEECCCCCCEEEECCCCCEEEEEECCHHHHCCCCHHHHCCCCEEECCCEEECCCCC RPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV CCHHEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCEEECCCCEE SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVA CCCCEEEEECCHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHEEEECCCC TESFFPGPWSLRGLSPRSVAKLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHH LRERLRATRLKQSA HHHHHHHHHHHCCC >Mature Secondary Structure ATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVG CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCC TNGVIGFDWDSTTYNPEGLEGFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLD CCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEE VAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDTLGNSVGLTDGNGNVYELEGS ECCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEECCC RDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN CCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCC QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQ CCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCC DFYHWNAETGSNAVIRMNNTPTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLP CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEECEECCCCEEECC EAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGSTPLTASEVFTTEVPTVTASD CCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHEEEECCCEEEECC NDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD CCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCC TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGG EEEECCCEEEEEECCCCCCCCCHHHCCEEEECCCCCCEEEECCCCCHHHCCCCCCCCCCC LGDDVMTSAGGEDLFVLTTSGGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVT CCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC RNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANLYSAGIPCFTTGTLIDTATGP CCCEEEECCCCCCEEEECCCCCEEEEEECCHHHHCCCCHHHHCCCCEEECCCEEECCCCC RPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV CCHHEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCEEECCCCEE SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVA CCCCEEEEECCHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHEEEECCCC TESFFPGPWSLRGLSPRSVAKLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHH LRERLRATRLKQSA HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA