Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081327

Identifier: 99081327

GI number: 99081327

Start: 1587568

End: 1588521

Strand: Reverse

Name: 99081327

Synonym: TM1040_1486

Alternate gene names: NA

Gene position: 1588521-1587568 (Counterclockwise)

Preceding gene: 99081333

Following gene: 99081326

Centisome position: 49.63

GC content: 57.76

Gene sequence:

>954_bases
ATGCGGTTATCATCTCACAACCTCCCTGATACGACTGCGCCGTCGCGCCCACATGTGACCGTGTTTTGTGCGGTCTGGCA
CAAACAGCCAAACAAGCTGGAGTTGCTGAAATCCCATTGGGACAATCTAAAACGGCAAAGCATCCCGGTAGAGCCTTGTT
ATATTTTCGACAATGGGGACACCGCGCCCGAATGGCTGGCCGCACCGTGGCACTCCTTCTCCGAGCCTCTGACCATCTAC
GAGGCATGGGCAGCAGGGGTGGCGCTTGCGCGCACCCGGTTCGTCATGAACCTCAACATGGATGACCGGCTGAGCACGGA
TGCGGCTGAAATGATGCTGCGCGGGCTTTTGCAGACGGATACAGCCTTGATTGGCGGTGAATGGATCATCCAGTTCGACC
ACGCGTTTCAGACGGAGGTCTTTGGGTCGAGCGATCCTAAACAAACCTGTTTTGAGCCCGCTTGGCCCCCCGCTCCGATT
GAGGGCGATAAACGTTTGCGCCTCGGAAGCGGCACGGGCGAGCGGGGTACGCTTGGGCCTGCAACGCTTTGGGATCTTGA
GAAAACTCAGCGCTGGTATCCAACTCATTTCGGCAATCGCGACCCGATCCTGTCGATTGGCGATGCGATTTTCTGGCAGC
ATCTGCACAAGAAAAAACTGCGCACCGCGCGGCTGCCTCTGGTTATTGGGCGGTATTTTTCCTCACCGGATGCGCAGGCC
GAGTTCCGCCCGCACAATGACGAGGAAAACCTGCGCACCCATGGTGTGCATGAGGTGTCTTTTGCCCAGAGCATAACAGC
CACACGGAACGCGATGCCCCAACCGGCACCGCAAGGCGCGTCCCCGTTTCCAAAATCGCGCAACGCAATAGAAAACGAAA
GCCAGGCTCTCGCGCTAAAATATCTTGGTCTTCTGGGCCATGGCACTCCGGCCGCGTCACATCCCCGAGCATGA

Upstream 100 bases:

>100_bases
TTTTCTCATTCTAGATTAACTGCACCTTAAACTCTGGGCTTTATTAAAACTTTCACGAGCCACGCGACGTGGAACTTTTG
ACGAGGAAACGGCCTGGAAG

Downstream 100 bases:

>100_bases
GCCAGCCCCTTCGCATATTTCTGACCGGCAGTGGCGGCATCCTTGGCAGGCATGTTTCAACCGCGCTCCTGGCTCATGCG
CCAGGCGCGCAGGTTTTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPWHSFSEPLTIY
EAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPI
EGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA
EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA

Sequences:

>Translated_317_residues
MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPWHSFSEPLTIY
EAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPI
EGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA
EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA
>Mature_317_residues
MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPWHSFSEPLTIY
EAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPI
EGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA
EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35508; Mature: 35508

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGD
CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
TAPEWLAAPWHSFSEPLTIYEAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTD
CCHHHHHCCHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC
TALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPIEGDKRLRLGSGTGERGTLGP
CEEECCEEEEEECCCHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
ATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA
HHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALK
CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHH
YLGLLGHGTPAASHPRA
HHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGD
CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
TAPEWLAAPWHSFSEPLTIYEAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTD
CCHHHHHCCHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC
TALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPIEGDKRLRLGSGTGERGTLGP
CEEECCEEEEEECCCHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
ATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA
HHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALK
CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHH
YLGLLGHGTPAASHPRA
HHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA