Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081312

Identifier: 99081312

GI number: 99081312

Start: 1572318

End: 1573064

Strand: Direct

Name: 99081312

Synonym: TM1040_1471

Alternate gene names: NA

Gene position: 1572318-1573064 (Clockwise)

Preceding gene: 99081311

Following gene: 99081314

Centisome position: 49.12

GC content: 59.97

Gene sequence:

>747_bases
ATGGCCACCGCGTCCCCTCGACGCGGTCGGGCGGCCCGACTTTCAAAGCGGGCCGCTCTGTCTTTGCCACAGGGCAAATC
TCTCGACGCACAAAGCCTGACCGAACACGGCCTCGCCGCCCCAGAACGAGAGCGCAAAACTGGCCGCATCCTTTTGATCG
CCTGTGGCGCTCTGGCGCGTGAAATCCTGGCGATCACGCGCGCCAATCAGTTCGATCACATCGATCTGACCTGCTTGCCG
GCGAAACTTCATCTTTATCCTGACCAGATCGTCACCCATGTGGAGGCCGCCGTCACAAAGCACCGCGCGGTCTACGATCA
GATCTACGTGGTCTACGCCGATTGCGGCACGGGCGGGCAGCTCCAACAAAGCTGCGCCGAATTGGGGGTCGAGATGGTCC
CCGGCCCCCATTGCTACGCCTTCTTTGAAGGCACCGACCGCTTTAACGCCTATGCCGACGCCGGTGAAATCACGGCCTTT
TACCTCACGGATTTTCTGGTCAAACAATTCGATGCCTTTGTGTGGCGTCCAATGGGCCTTGATAAGAACCCCGAGCTGCG
GGACATGATCTTCGGGAACTATACCACCCTGATCTACCAGTCGCAGACCGAAGACCCGGACCTGTTGGAAAAAGCCCGCG
CCTGCGCAGCGCGCATGGGGCTCGACTTTCAACACCGTCACACCGGCTACGGGGAACTCGAAACCACCCTCATGGACTGG
GCCACGCCCAATCCTTCTTCTGACTAG

Upstream 100 bases:

>100_bases
AAGGCCATCGGCGCCGACGCCTACTGCCGCGACGCGGCTGTCGCGGTTGAAACCGCCAAAGAATTTGTGGCGCGCAAGCA
CAACGCCATGAACGCCTGAT

Downstream 100 bases:

>100_bases
AAATATCCCGGGGTGAATAGGCCAAAGGCCAAGAGGGGCAGCGCCCCTTTTTGGTTGCCCTAGGTTGCCCCTGGCGCCAC
TGTTACGCTTGGGCCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MATASPRRGRAARLSKRAALSLPQGKSLDAQSLTEHGLAAPERERKTGRILLIACGALAREILAITRANQFDHIDLTCLP
AKLHLYPDQIVTHVEAAVTKHRAVYDQIYVVYADCGTGGQLQQSCAELGVEMVPGPHCYAFFEGTDRFNAYADAGEITAF
YLTDFLVKQFDAFVWRPMGLDKNPELRDMIFGNYTTLIYQSQTEDPDLLEKARACAARMGLDFQHRHTGYGELETTLMDW
ATPNPSSD

Sequences:

>Translated_248_residues
MATASPRRGRAARLSKRAALSLPQGKSLDAQSLTEHGLAAPERERKTGRILLIACGALAREILAITRANQFDHIDLTCLP
AKLHLYPDQIVTHVEAAVTKHRAVYDQIYVVYADCGTGGQLQQSCAELGVEMVPGPHCYAFFEGTDRFNAYADAGEITAF
YLTDFLVKQFDAFVWRPMGLDKNPELRDMIFGNYTTLIYQSQTEDPDLLEKARACAARMGLDFQHRHTGYGELETTLMDW
ATPNPSSD
>Mature_247_residues
ATASPRRGRAARLSKRAALSLPQGKSLDAQSLTEHGLAAPERERKTGRILLIACGALAREILAITRANQFDHIDLTCLPA
KLHLYPDQIVTHVEAAVTKHRAVYDQIYVVYADCGTGGQLQQSCAELGVEMVPGPHCYAFFEGTDRFNAYADAGEITAFY
LTDFLVKQFDAFVWRPMGLDKNPELRDMIFGNYTTLIYQSQTEDPDLLEKARACAARMGLDFQHRHTGYGELETTLMDWA
TPNPSSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27558; Mature: 27426

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATASPRRGRAARLSKRAALSLPQGKSLDAQSLTEHGLAAPERERKTGRILLIACGALAR
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECHHHHH
EILAITRANQFDHIDLTCLPAKLHLYPDQIVTHVEAAVTKHRAVYDQIYVVYADCGTGGQ
HHHHHHCCCCCCCEEEEEECEEEEECHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCHH
LQQSCAELGVEMVPGPHCYAFFEGTDRFNAYADAGEITAFYLTDFLVKQFDAFVWRPMGL
HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCC
DKNPELRDMIFGNYTTLIYQSQTEDPDLLEKARACAARMGLDFQHRHTGYGELETTLMDW
CCCCCHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHC
ATPNPSSD
CCCCCCCC
>Mature Secondary Structure 
ATASPRRGRAARLSKRAALSLPQGKSLDAQSLTEHGLAAPERERKTGRILLIACGALAR
CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECHHHHH
EILAITRANQFDHIDLTCLPAKLHLYPDQIVTHVEAAVTKHRAVYDQIYVVYADCGTGGQ
HHHHHHCCCCCCCEEEEEECEEEEECHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCHH
LQQSCAELGVEMVPGPHCYAFFEGTDRFNAYADAGEITAFYLTDFLVKQFDAFVWRPMGL
HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCC
DKNPELRDMIFGNYTTLIYQSQTEDPDLLEKARACAARMGLDFQHRHTGYGELETTLMDW
CCCCCHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHC
ATPNPSSD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA