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The map label for this gene is 99081310

Identifier: 99081310

GI number: 99081310

Start: 1570319

End: 1571401

Strand: Reverse

Name: 99081310

Synonym: TM1040_1469

Alternate gene names: NA

Gene position: 1571401-1570319 (Counterclockwise)

Preceding gene: 99081313

Following gene: 161899029

Centisome position: 49.09

GC content: 63.99

Gene sequence:

>1083_bases
ATGCAGAACACGGATCCTTTTTCGCCTCGATGTCGCAAAGCGCGCGGTGCGCTCAGCAATGCGGCAGGCCGGTTTGATCT
GGCGCGCGAGGCGCAGGACGATGGCTGGTGGCAGGAGGCGCCGGATCCTTCTGTTGCGACAGAGATTCGCAACGAGCTAG
CGCGCAGCCTGATCTCTTACAACCGTTCGCCGGATCTGCCCTTTGACCGCTCGATCAACCCCTATCGCGGCTGTGAGCAA
GGTTGCGTGTATTGTTTTGCGCGCCCGTCGCATGCCTATCTCGGCCTGTCGCCGGGGCTGGATTTCGAAACCCGGCTTGT
TGCACGCAGCAACGCGGCAGAGGTGCTGCGAAAAGAGCTCTCGGCGCGGAGCTACAAGGTCGCGACCCTGGCCATCGGCA
CCAACACGGATCCCTATCAGCCCTGCGAGCGGGATCATCTCTTGATGCGCCAGTGTCTTGAGGTGCTGCAGGCGTTCAAT
CACCCGGTGGCAATTGTCACCAAGGGCACTCTGATCGAGCGCGATATTGATATTCTGACCGATATGGCGCGCCGCGGCCT
GGTGCGAGTCGGGATTTCCGTGACCACGTTGGATGCGAACCTGTCGCGGCGGATGGAGCCGCGCGCGCCGGTGCCTGCGC
GGCGCCTGGCGACGATCCGACGGCTGAGTGCTGCGGGGGTTCCAGTACGCATAATGACGTCGCCCTTGGTGCCGGGGCTC
ACCGATCACGAGCTTGAGGCGCTATTGGCAGCCGGGCAGGACGCGGGTGCAGATGCGGCCAGCTGGATCATGTTGCGCCT
GCCGCGCGAGGTATCGCAGCTCTGGCAGGACTGGCTTCAAGAGCATGCACCCGATCGGGCCGCCAAGGTGATGGCGCGGC
TGCGCGAGATGCATGGCGGGCGCGATTACGATCCGCGCTGGGGGCACCGGATGCGAGGGGAGGGCGAGTATGCCGAGATG
ATCGCGCGCCGTTTTCGGCTGGCTTGCAAGCGGCTTGGATTGGCAGAGCGCACCGCGCCCCTCAGAACAGACCTCTTTGC
AAAACCGCTGCAGCCCGGCGATCAGCTCAGCCTGTTTTCCTGA

Upstream 100 bases:

>100_bases
CGTCGGGAAATAGGTCAGATTGACCCTTTGAGGCAGGGGCTTGGGGGTTTCTTGAGTTTATGTTCTTTATTTGTTCTCAT
AGGTGTGCCATAAGGACCAA

Downstream 100 bases:

>100_bases
CACCGCTTAATTCTGACAGCGCATAAATAAAGAGCCTGTTCAATGACCGGCTCTTTCAAGGACGCATGCTGAGGATCGGA
TCAGCTGCGACGGCGCCCGC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MQNTDPFSPRCRKARGALSNAAGRFDLAREAQDDGWWQEAPDPSVATEIRNELARSLISYNRSPDLPFDRSINPYRGCEQ
GCVYCFARPSHAYLGLSPGLDFETRLVARSNAAEVLRKELSARSYKVATLAIGTNTDPYQPCERDHLLMRQCLEVLQAFN
HPVAIVTKGTLIERDIDILTDMARRGLVRVGISVTTLDANLSRRMEPRAPVPARRLATIRRLSAAGVPVRIMTSPLVPGL
TDHELEALLAAGQDAGADAASWIMLRLPREVSQLWQDWLQEHAPDRAAKVMARLREMHGGRDYDPRWGHRMRGEGEYAEM
IARRFRLACKRLGLAERTAPLRTDLFAKPLQPGDQLSLFS

Sequences:

>Translated_360_residues
MQNTDPFSPRCRKARGALSNAAGRFDLAREAQDDGWWQEAPDPSVATEIRNELARSLISYNRSPDLPFDRSINPYRGCEQ
GCVYCFARPSHAYLGLSPGLDFETRLVARSNAAEVLRKELSARSYKVATLAIGTNTDPYQPCERDHLLMRQCLEVLQAFN
HPVAIVTKGTLIERDIDILTDMARRGLVRVGISVTTLDANLSRRMEPRAPVPARRLATIRRLSAAGVPVRIMTSPLVPGL
TDHELEALLAAGQDAGADAASWIMLRLPREVSQLWQDWLQEHAPDRAAKVMARLREMHGGRDYDPRWGHRMRGEGEYAEM
IARRFRLACKRLGLAERTAPLRTDLFAKPLQPGDQLSLFS
>Mature_360_residues
MQNTDPFSPRCRKARGALSNAAGRFDLAREAQDDGWWQEAPDPSVATEIRNELARSLISYNRSPDLPFDRSINPYRGCEQ
GCVYCFARPSHAYLGLSPGLDFETRLVARSNAAEVLRKELSARSYKVATLAIGTNTDPYQPCERDHLLMRQCLEVLQAFN
HPVAIVTKGTLIERDIDILTDMARRGLVRVGISVTTLDANLSRRMEPRAPVPARRLATIRRLSAAGVPVRIMTSPLVPGL
TDHELEALLAAGQDAGADAASWIMLRLPREVSQLWQDWLQEHAPDRAAKVMARLREMHGGRDYDPRWGHRMRGEGEYAEM
IARRFRLACKRLGLAERTAPLRTDLFAKPLQPGDQLSLFS

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40378; Mature: 40378

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNTDPFSPRCRKARGALSNAAGRFDLAREAQDDGWWQEAPDPSVATEIRNELARSLISY
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
NRSPDLPFDRSINPYRGCEQGCVYCFARPSHAYLGLSPGLDFETRLVARSNAAEVLRKEL
CCCCCCCCCCCCCHHCCCCCCCEEEEECCCCCEEECCCCCCHHHHHHHCCCHHHHHHHHH
SARSYKVATLAIGTNTDPYQPCERDHLLMRQCLEVLQAFNHPVAIVTKGTLIERDIDILT
HCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
DMARRGLVRVGISVTTLDANLSRRMEPRAPVPARRLATIRRLSAAGVPVRIMTSPLVPGL
HHHHCCCEEECCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
TDHELEALLAAGQDAGADAASWIMLRLPREVSQLWQDWLQEHAPDRAAKVMARLREMHGG
CHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
RDYDPRWGHRMRGEGEYAEMIARRFRLACKRLGLAERTAPLRTDLFAKPLQPGDQLSLFS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQNTDPFSPRCRKARGALSNAAGRFDLAREAQDDGWWQEAPDPSVATEIRNELARSLISY
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
NRSPDLPFDRSINPYRGCEQGCVYCFARPSHAYLGLSPGLDFETRLVARSNAAEVLRKEL
CCCCCCCCCCCCCHHCCCCCCCEEEEECCCCCEEECCCCCCHHHHHHHCCCHHHHHHHHH
SARSYKVATLAIGTNTDPYQPCERDHLLMRQCLEVLQAFNHPVAIVTKGTLIERDIDILT
HCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
DMARRGLVRVGISVTTLDANLSRRMEPRAPVPARRLATIRRLSAAGVPVRIMTSPLVPGL
HHHHCCCEEECCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
TDHELEALLAAGQDAGADAASWIMLRLPREVSQLWQDWLQEHAPDRAAKVMARLREMHGG
CHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
RDYDPRWGHRMRGEGEYAEMIARRFRLACKRLGLAERTAPLRTDLFAKPLQPGDQLSLFS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]