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The map label for this gene is ygdK [C]

Identifier: 99081313

GI number: 99081313

Start: 1573147

End: 1573569

Strand: Reverse

Name: ygdK [C]

Synonym: TM1040_1472

Alternate gene names: 99081313

Gene position: 1573569-1573147 (Counterclockwise)

Preceding gene: 99081315

Following gene: 99081310

Centisome position: 49.16

GC content: 59.57

Gene sequence:

>423_bases
ATGAGGTTTGACATGGCCAGCGCTGCCTTCGAGGAAATCGTCGAGGACTTTGAGTTCTTTGAGGACTGGGAGGATCGCTA
CCGTCATGTGATCGAACAGGGCAAGGCGATGGCGCCGCTGGACGACGCGCTGAAGGTGCCTGCAACCAAGGTGGACGGTT
GTGCAAGCCAGGTCTGGCTGCACCCGCAGATTGAAAATGGCGTGTTTCACTTTGACGGCGACAGCGATGCGATGATCGTC
AAAGGGCTGATCGCAGTTCTGCAAAAACTCTATAACGGGCTCACGCTTTCCGAGGTGCTGGCCGTCGACGCCCGCGCGGA
GATGGGGCGCCTTGGGCTCAATGATCACCTTTCTGCGCAGCGCTCCAACGGTTTGCGCGCGATGATCGAGCGCATCCGCG
AAACGGCGGCGGCCCAAGCGTAA

Upstream 100 bases:

>100_bases
GAGTTACTTGCAAAACTGACTACCCGATTGAAGCGGCGTTGAAAAGCGGTTGAAAAGACCTGGTCTCTGGCCTAGGTCCG
AGACAGATCGTGATCACGAG

Downstream 100 bases:

>100_bases
CAGTGGCGCCAGGGGCAACCTAGGGCAACCAAAAAGGGGCGCTGCCCCTCTTGGCCTTTGGCCTATTCACCCCGGGATAT
TTCTAGTCAGAAGAAGGATT

Product: cysteine desulfuration protein SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRFDMASAAFEEIVEDFEFFEDWEDRYRHVIEQGKAMAPLDDALKVPATKVDGCASQVWLHPQIENGVFHFDGDSDAMIV
KGLIAVLQKLYNGLTLSEVLAVDARAEMGRLGLNDHLSAQRSNGLRAMIERIRETAAAQA

Sequences:

>Translated_140_residues
MRFDMASAAFEEIVEDFEFFEDWEDRYRHVIEQGKAMAPLDDALKVPATKVDGCASQVWLHPQIENGVFHFDGDSDAMIV
KGLIAVLQKLYNGLTLSEVLAVDARAEMGRLGLNDHLSAQRSNGLRAMIERIRETAAAQA
>Mature_140_residues
MRFDMASAAFEEIVEDFEFFEDWEDRYRHVIEQGKAMAPLDDALKVPATKVDGCASQVWLHPQIENGVFHFDGDSDAMIV
KGLIAVLQKLYNGLTLSEVLAVDARAEMGRLGLNDHLSAQRSNGLRAMIERIRETAAAQA

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=123, Percent_Identity=43.0894308943089, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI1787969, Length=119, Percent_Identity=38.655462184874, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15624; Mature: 15624

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDMASAAFEEIVEDFEFFEDWEDRYRHVIEQGKAMAPLDDALKVPATKVDGCASQVWL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHCCHHHHHCC
HPQIENGVFHFDGDSDAMIVKGLIAVLQKLYNGLTLSEVLAVDARAEMGRLGLNDHLSAQ
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
RSNGLRAMIERIRETAAAQA
HCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFDMASAAFEEIVEDFEFFEDWEDRYRHVIEQGKAMAPLDDALKVPATKVDGCASQVWL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHCCHHHHHCC
HPQIENGVFHFDGDSDAMIVKGLIAVLQKLYNGLTLSEVLAVDARAEMGRLGLNDHLSAQ
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
RSNGLRAMIERIRETAAAQA
HCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9057324 [H]