| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081294
Identifier: 99081294
GI number: 99081294
Start: 1551847
End: 1553010
Strand: Direct
Name: 99081294
Synonym: TM1040_1453
Alternate gene names: NA
Gene position: 1551847-1553010 (Clockwise)
Preceding gene: 99081293
Following gene: 99081295
Centisome position: 48.48
GC content: 56.01
Gene sequence:
>1164_bases ATGCGTCAAACGCGCTTCTTTAAAATGGCGCAACGAGCAGATTCAATTTTCGACGGAGGCATCACAGGCATGCCCACCCA TGACTTTTTTGTCTACACGCCGGATGCGCTGACGTTTTCCGGCGGTACGATCCGCGTAAACTCTGGTTTTGACCCGCTTT CTGATCGGCGCGTTGTGTCTCTCACAGATGACGATTCCACGCTGGATGGGGATTTCACCCGAAATGAGCGCGGTATCGAC AGCAACCAGCGGGCAACGGTTTTTGAAAGCGATGGCAGCACATTGGCGCGTATCGGCGGAGATTTTGTGCAAAACGACCA AGTCTATGCAGAAAATCAATATGTGCTGACCGGCGATGATGGCAGCGAAATTACCGTTTATGCGCTGGAAAGCGGCGGCA CACTTATTGGCTATCTTCCAACTGCGCCGCTTTTACGGGATGTGAATTACAGCTACCGGACCCACAATGTCATCAACGAT GACGAGCTGACGGGCTCCTATCAATATTGGTATCGTCAATACCTCGGCGAGGACGCGACCGATGCCGGATCCTATGATGA CATTCAGGGGGCCGTGATCGTGTGTTTTACGCCCAACGCGCAGGTCACCACCCCGGAAGGTCCGCGCCGCATCCGGGATC TTGCCGTGGGCGATCGCGTGCTGACACGGGACAATGGTTATCAGACCCTGCGGTGGAAATATCACCGCCGCCTGTCACGC GCAGATCTCGACCGTCAACCGCATCTGGCGCCAATCATCTTTGAGCCAGACGCACTGGCGCCGGGCTGCCCCAAACGCCG CCTCAAAGTGTCTCCACAGCACCGGATTCTCATTGAATCCCACATGAGCGGGCTCCTCTTTGCCAGCAATGCCATCCTCG CACCGGCCAAGGGGCTGGTGAACGGCACCAGTGTGCGACAGGATCAAAGTGGCATGCCGGTCACCTATGTGCATCTGATG TTTGATCGCCATGAGGTGATCGAGGCCGATGGGCTCTATTCCGAAAGCTACCATCCCGGTGCCTGGGCGCTTGCGGCTGC CGAAGATGCGGTCCGGCGCGAGCTTTTTGAGATATTCCCGGCTCTGGAGGCGGATCTCAATGCCTATGGCCCTACATGTT ATCCCTCTATAAATGCTCAAGAAGCACGTCTACTGAAGGCATGA
Upstream 100 bases:
>100_bases ATCACAGCACAGGCGCCATTTTCAAAGCGCCCTGCTCTGCGCGCGGCCCCATATTTGCGTTAGCAATTTCTTTACCTTTT TACATTTCGCGCGCATACTG
Downstream 100 bases:
>100_bases GATCATGATTGGCGAACGGCCCAAGAAACGCTCCCTCACCCTGCGCGGTCACCGGACCTCGGTCTCGCTGGAGGATGCTT TCTGGAGCGAATTTCGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDGDFTRNERGID SNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVIND DELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLM FDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA
Sequences:
>Translated_387_residues MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDGDFTRNERGID SNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVIND DELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLM FDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA >Mature_387_residues MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDGDFTRNERGID SNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVIND DELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLM FDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43097; Mature: 43097
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS50817 INTEIN_N_TER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVS CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCEEEECCCCCCCCCCEEEE LTDDDSTLDGDFTRNERGIDSNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDD ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHCCCHHCCCEEEECCEEEEECCC GSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVINDDELTGSYQYWYRQYLGEDAT CCEEEEEEEECCCEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC DAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR CCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHH ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLV HCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEECCCEECCCCCCC NGTSVRQDQSGMPVTYVHLMFDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFP CCCCCCCCCCCCCEEEEEEEECCHHHEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH ALEADLNAYGPTCYPSINAQEARLLKA HHHHCCCCCCCCCCCCCCHHHHHEECC >Mature Secondary Structure MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVS CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCEEEECCCCCCCCCCEEEE LTDDDSTLDGDFTRNERGIDSNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDD ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHCCCHHCCCEEEECCEEEEECCC GSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVINDDELTGSYQYWYRQYLGEDAT CCEEEEEEEECCCEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC DAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR CCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHH ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLV HCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEECCCEECCCCCCC NGTSVRQDQSGMPVTYVHLMFDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFP CCCCCCCCCCCCCEEEEEEEECCHHHEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH ALEADLNAYGPTCYPSINAQEARLLKA HHHHCCCCCCCCCCCCCCHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA