Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is ygfJ [C]

Identifier: 99081274

GI number: 99081274

Start: 1530278

End: 1530904

Strand: Direct

Name: ygfJ [C]

Synonym: TM1040_1433

Alternate gene names: 99081274

Gene position: 1530278-1530904 (Clockwise)

Preceding gene: 99081273

Following gene: 99081288

Centisome position: 47.81

GC content: 63.48

Gene sequence:

>627_bases
ATGAACGCTGGCCCGTCACAACATATGCCGAAATTGGCCATTCTCCTGCTGGCGGCGGGCGCATCGTCACGAATGCGCGG
GCGTGACAAATTGTTGGAACAGGTGAACGGCCGCCCCCTGGTTGCGGGGCTGAGCGATGCGGCGCGCGCATCGGGATGTG
AGGTCTATGTGACTGTGCCGCATCTCGAACACCCGCGCGCCAGTGCTGCGGGCGAGGCTCATCTGGTTGCGGTTCCGAAT
GCGGTCGAAGGATTGAGTGCCTCGCTCCGCGCGGGCATCACCGCTCTGGCGGGCGATATCGACGGTGTCATGGTGTTGCC
AGCCGACATGCCCGAAATCACTGCTGCGGATTTCCTGAAAATGGCAGAGCAATTTGCCGGTCCAGAGGGGGCTATTCTAC
GTGCAAGCGGCACAGATCAAAGCGGCGCTCGCCGAGCAGGTCACCCCGTGCTGTTTCCACGCCGATGCTTTGATGCGCTG
CAAACGCTCACGGGCGATGCGGGCGCGCGGGAACTTCTCAAACAGGAGGCGGTGCAGTTGATCGCGCTGCCGGGCGCGCA
TGCGCTCACGGATCTGGACACGCCCGAAGACTGGACCAAGTGGCGCGCGCGCCAAGGTGACGTCTGA

Upstream 100 bases:

>100_bases
CGGCCTTTGTCACCGCCGATGTGCCCTCTGAAAAGGTGCTTGAGGTGCTGCAAGAGGCGCTGGCGCATACACAACCCGCC
TGATCTCGATGGGGCAAGAG

Downstream 100 bases:

>100_bases
TCAGTGCAGCAACATCCGCGCTTCGCGTTCCTTCAACTCGCGCCGTGCCGAGGGATAGGCCTTTTGCCCTTCCTTGGTGC
GAAGTTCGGGAAACAGTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Purine Catabolism Protein PucB; Protein Family UPF; Molybdopterin Biosynthesis; Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A; Molybdenum Hydroxylase Accessory Protein YgfJ Family; L-Seryl-TRNA(Ser) Selenium Transferase Protein; MobA-Like Protein-Like Protein; Molybdopterin Molybdochelatase; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; Molybdenum Cofactor Cytidylyltransferase; Molybdenum Cofactor Biosynthesis Protein

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAAGEAHLVAVPN
AVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDAL
QTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV

Sequences:

>Translated_208_residues
MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAAGEAHLVAVPN
AVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDAL
QTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV
>Mature_208_residues
MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAAGEAHLVAVPN
AVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDAL
QTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV

Specific function: Unknown

COG id: COG2068

COG function: function code R; Uncharacterized MobA-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21766; Mature: 21766

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVP
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCEEEEECC
HLEHPRASAAGEAHLVAVPNAVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLK
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
MAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDALQTLTGDAGARELLKQEAVQL
HHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHE
IALPGAHALTDLDTPEDWTKWRARQGDV
EECCCCHHHCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVP
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCEEEEECC
HLEHPRASAAGEAHLVAVPNAVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLK
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
MAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDALQTLTGDAGARELLKQEAVQL
HHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHE
IALPGAHALTDLDTPEDWTKWRARQGDV
EECCCCHHHCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA