| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081270
Identifier: 99081270
GI number: 99081270
Start: 1526794
End: 1528326
Strand: Reverse
Name: 99081270
Synonym: TM1040_1429
Alternate gene names: NA
Gene position: 1528326-1526794 (Counterclockwise)
Preceding gene: 99081271
Following gene: 99081269
Centisome position: 47.75
GC content: 64.32
Gene sequence:
>1533_bases ATGCCGACTAAGACTGCATCGCTGGCGATCGGCGTCTTTTTGCTTGCGAGCGCGCCCGGAGACGCGCGCGAGCCGCTGGC CGCGATTGACTGGCTCAACAGTGCGCCGCCGGTTGCCAATATTCCAACGACCCTGCTCCAGGAACCCCCGGTCGCCAAGA GCGCCTATGGGCCGGACATTACCGTGACCCCGCTTGAGCGGCTTCTGCCGCCTGTGGGGCTGGTGCCACAGTCGCGCACC GGGCTTCCGATCACACTCTGGCAGGGCAGCCCGCCGGACCAGCTTGCGGGTTTGATCCGTGACGTGCCGGTTCAGGATCT GCCTTCGATGCAATCCTTGCTGATGACACTGCTGCTGACGGAAGCGCGCCCGCCGTTTCGCGACAATGATGAAATCCTGC TGGCGCGGCTCGACCGGCTGCGTGATCTGGGCGCGACGGAACCGGTGCAGGCCCTTGTGCAAGAAGCAGGCCCCACCGAG AGCGCTGCACGTTTTGAGCGCTGGTTTGACGCGACGCTTTTGAATGGGGATGAGGACCGCAGCTGCGCGGCGCTGACGGC CGATCCCTATTTGATGCAGGATTATCCGGCGCGCATCTTTTGCGCTGCACGCCGTGGGGATTGGCCAACGGCGGCATTGA TGCTGGAAACAGCCGATGCGCTCGGGCTCCTTGAGTCTGATGATATGGCACTGCTGGATCGTTTCCTGAACCCGGACATC TACGAGGGCATGCCGCCGCTGCCGCTGCCGCAGAACCCGACCCCGCTCGAATTTCGCATGTTCGAGGCCATCGGCGAACC CATGCCGACCCGGTCGTTGCCACGCGCCTTTGCCAGTGCGGATCTGCGCGATGTGGCGGGCTGGAAGGCGCAGCTCGAAG CGGCAGAGCGCCTGACCCGCAGTCGCGCCATGAATCCCAATCAATTGCTTGGCCTGTTTACTCAACGAAAGCCCGCAGCC TCGGGAGGCATTTGGGATCGTGTCGATGCCGTGCAACGCTTTGACGCGGCGCTTGGGACCGGCAGTGCCGAAGCGGTGCG CAAAACCCTGCCTGCGTTCTGGGCGGCTGCACAGGCGGCAGGGCTTGAGATGGCGATGGCAGATCTGTTTGCGCCGCGTC TGGCCGGTATCGTGCTCGACGGTCCGGCCGCACAGATCGCCTGGCACATGCGTCTGCTCTCGGCAGAGTATGAGATCGCC GCACAGTCTCCGCCCGACCAAAGCCGCGCGACGCGGTTCCTCGTCTCCCTCGCTCAAGGCACCCCTGCGATGGATCTGGC CTCGACACCACAGGAAAAGGCGATCGCCCGCGGTTTTGCCGCAGATAGCGAGATGCCAGCCGCCCAGAAACTGTTGCTTG ACCGGGCCCGCTTGGGGGAGGCCATCCTGGTGACCATGAAGAGCTTTAGCCACGGTGCCGACGGCAATATCGAGGCAATC ACCTTGTCACTCGCGGCGTTTCGGCGGATGGGTCTTGAAGACAGCGCCCGCCGCGCAGCGCTGCAGCTCCTGTTGTTGCC GCGAGGAAGCTGA
Upstream 100 bases:
>100_bases CTCGCCGCAATCGCACTGATTGCTTATGCGTATGTGGGGCCTTGGTTTGGGGCGGATTTCTCGGCGCCCTCGGAAGAAGT GCGCAAGCCTGTGGTGCTCA
Downstream 100 bases:
>100_bases ACCATGCTGGCACCCGCGGACGATCTGCAATGGATTTCGACCTTTCTCGATGCGCAGGCCGCAGAACTCGGTGCAGCGCG CAACACGCTGCTGGCTTACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLPPVGLVPQSRT GLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTE SAARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAA SGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIA AQSPPDQSRATRFLVSLAQGTPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI TLSLAAFRRMGLEDSARRAALQLLLLPRGS
Sequences:
>Translated_510_residues MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLPPVGLVPQSRT GLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTE SAARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAA SGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIA AQSPPDQSRATRFLVSLAQGTPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI TLSLAAFRRMGLEDSARRAALQLLLLPRGS >Mature_509_residues PTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLPPVGLVPQSRTG LPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTES AARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDIY EGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAAS GGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAA QSPPDQSRATRFLVSLAQGTPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAIT LSLAAFRRMGLEDSARRAALQLLLLPRGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54970; Mature: 54839
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDI CCCCHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCC TVTPLERLLPPVGLVPQSRTGLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLT EECCHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHH EARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTESAARFERWFDATLLNGDEDR HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC SCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI CEEEEECCCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTR HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH SRAMNPNQLLGLFTQRKPAASGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAA HHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAAQSPPDQSRATRFLVSLAQG HHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCC TPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHEEEHHHCCCCCCCCEEEE TLSLAAFRRMGLEDSARRAALQLLLLPRGS EHHHHHHHHCCCCHHHHHHHHHEEEECCCC >Mature Secondary Structure PTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDI CCCHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCC TVTPLERLLPPVGLVPQSRTGLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLT EECCHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHH EARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTESAARFERWFDATLLNGDEDR HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC SCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI CEEEEECCCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTR HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH SRAMNPNQLLGLFTQRKPAASGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAA HHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAAQSPPDQSRATRFLVSLAQG HHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCC TPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHEEEHHHCCCCCCCCEEEE TLSLAAFRRMGLEDSARRAALQLLLLPRGS EHHHHHHHHCCCCHHHHHHHHHEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA