Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081270

Identifier: 99081270

GI number: 99081270

Start: 1526794

End: 1528326

Strand: Reverse

Name: 99081270

Synonym: TM1040_1429

Alternate gene names: NA

Gene position: 1528326-1526794 (Counterclockwise)

Preceding gene: 99081271

Following gene: 99081269

Centisome position: 47.75

GC content: 64.32

Gene sequence:

>1533_bases
ATGCCGACTAAGACTGCATCGCTGGCGATCGGCGTCTTTTTGCTTGCGAGCGCGCCCGGAGACGCGCGCGAGCCGCTGGC
CGCGATTGACTGGCTCAACAGTGCGCCGCCGGTTGCCAATATTCCAACGACCCTGCTCCAGGAACCCCCGGTCGCCAAGA
GCGCCTATGGGCCGGACATTACCGTGACCCCGCTTGAGCGGCTTCTGCCGCCTGTGGGGCTGGTGCCACAGTCGCGCACC
GGGCTTCCGATCACACTCTGGCAGGGCAGCCCGCCGGACCAGCTTGCGGGTTTGATCCGTGACGTGCCGGTTCAGGATCT
GCCTTCGATGCAATCCTTGCTGATGACACTGCTGCTGACGGAAGCGCGCCCGCCGTTTCGCGACAATGATGAAATCCTGC
TGGCGCGGCTCGACCGGCTGCGTGATCTGGGCGCGACGGAACCGGTGCAGGCCCTTGTGCAAGAAGCAGGCCCCACCGAG
AGCGCTGCACGTTTTGAGCGCTGGTTTGACGCGACGCTTTTGAATGGGGATGAGGACCGCAGCTGCGCGGCGCTGACGGC
CGATCCCTATTTGATGCAGGATTATCCGGCGCGCATCTTTTGCGCTGCACGCCGTGGGGATTGGCCAACGGCGGCATTGA
TGCTGGAAACAGCCGATGCGCTCGGGCTCCTTGAGTCTGATGATATGGCACTGCTGGATCGTTTCCTGAACCCGGACATC
TACGAGGGCATGCCGCCGCTGCCGCTGCCGCAGAACCCGACCCCGCTCGAATTTCGCATGTTCGAGGCCATCGGCGAACC
CATGCCGACCCGGTCGTTGCCACGCGCCTTTGCCAGTGCGGATCTGCGCGATGTGGCGGGCTGGAAGGCGCAGCTCGAAG
CGGCAGAGCGCCTGACCCGCAGTCGCGCCATGAATCCCAATCAATTGCTTGGCCTGTTTACTCAACGAAAGCCCGCAGCC
TCGGGAGGCATTTGGGATCGTGTCGATGCCGTGCAACGCTTTGACGCGGCGCTTGGGACCGGCAGTGCCGAAGCGGTGCG
CAAAACCCTGCCTGCGTTCTGGGCGGCTGCACAGGCGGCAGGGCTTGAGATGGCGATGGCAGATCTGTTTGCGCCGCGTC
TGGCCGGTATCGTGCTCGACGGTCCGGCCGCACAGATCGCCTGGCACATGCGTCTGCTCTCGGCAGAGTATGAGATCGCC
GCACAGTCTCCGCCCGACCAAAGCCGCGCGACGCGGTTCCTCGTCTCCCTCGCTCAAGGCACCCCTGCGATGGATCTGGC
CTCGACACCACAGGAAAAGGCGATCGCCCGCGGTTTTGCCGCAGATAGCGAGATGCCAGCCGCCCAGAAACTGTTGCTTG
ACCGGGCCCGCTTGGGGGAGGCCATCCTGGTGACCATGAAGAGCTTTAGCCACGGTGCCGACGGCAATATCGAGGCAATC
ACCTTGTCACTCGCGGCGTTTCGGCGGATGGGTCTTGAAGACAGCGCCCGCCGCGCAGCGCTGCAGCTCCTGTTGTTGCC
GCGAGGAAGCTGA

Upstream 100 bases:

>100_bases
CTCGCCGCAATCGCACTGATTGCTTATGCGTATGTGGGGCCTTGGTTTGGGGCGGATTTCTCGGCGCCCTCGGAAGAAGT
GCGCAAGCCTGTGGTGCTCA

Downstream 100 bases:

>100_bases
ACCATGCTGGCACCCGCGGACGATCTGCAATGGATTTCGACCTTTCTCGATGCGCAGGCCGCAGAACTCGGTGCAGCGCG
CAACACGCTGCTGGCTTACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLPPVGLVPQSRT
GLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTE
SAARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI
YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAA
SGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIA
AQSPPDQSRATRFLVSLAQGTPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI
TLSLAAFRRMGLEDSARRAALQLLLLPRGS

Sequences:

>Translated_510_residues
MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLPPVGLVPQSRT
GLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTE
SAARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI
YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAA
SGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIA
AQSPPDQSRATRFLVSLAQGTPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI
TLSLAAFRRMGLEDSARRAALQLLLLPRGS
>Mature_509_residues
PTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLPPVGLVPQSRTG
LPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTES
AARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDIY
EGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAAS
GGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAA
QSPPDQSRATRFLVSLAQGTPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAIT
LSLAAFRRMGLEDSARRAALQLLLLPRGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54970; Mature: 54839

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDI
CCCCHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
TVTPLERLLPPVGLVPQSRTGLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLT
EECCHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHH
EARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTESAARFERWFDATLLNGDEDR
HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
SCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI
CEEEEECCCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH
YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTR
HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SRAMNPNQLLGLFTQRKPAASGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAA
HHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAAQSPPDQSRATRFLVSLAQG
HHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCC
TPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI
CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHEEEHHHCCCCCCCCEEEE
TLSLAAFRRMGLEDSARRAALQLLLLPRGS
EHHHHHHHHCCCCHHHHHHHHHEEEECCCC
>Mature Secondary Structure 
PTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDI
CCCHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
TVTPLERLLPPVGLVPQSRTGLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLT
EECCHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHH
EARPPFRDNDEILLARLDRLRDLGATEPVQALVQEAGPTESAARFERWFDATLLNGDEDR
HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
SCAALTADPYLMQDYPARIFCAARRGDWPTAALMLETADALGLLESDDMALLDRFLNPDI
CEEEEECCCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH
YEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASADLRDVAGWKAQLEAAERLTR
HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SRAMNPNQLLGLFTQRKPAASGGIWDRVDAVQRFDAALGTGSAEAVRKTLPAFWAAAQAA
HHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAAQSPPDQSRATRFLVSLAQG
HHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCC
TPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAI
CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHEEEHHHCCCCCCCCEEEE
TLSLAAFRRMGLEDSARRAALQLLLLPRGS
EHHHHHHHHCCCCHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA