| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is lpxA [H]
Identifier: 99081245
GI number: 99081245
Start: 1497608
End: 1498393
Strand: Reverse
Name: lpxA [H]
Synonym: TM1040_1404
Alternate gene names: 99081245
Gene position: 1498393-1497608 (Counterclockwise)
Preceding gene: 99081246
Following gene: 99081244
Centisome position: 46.81
GC content: 62.6
Gene sequence:
>786_bases ATGAGCACGATTCACCCCAGCGCCATTATCGAGGATGGCGCCAAAATCGGCGAAGGCTGCGAAATCGGCCCCTTTTGCAT CGTCGGCGCTGAGGTGGTGTTGGGCGACCGCGTGGTGCTGAAGTCCCATGTGGTCGTGACCGGCGACACGGAGATCGGCG ATGACACGGTTGTGTTTTCCTTCTCTGTGCTGGGCGAGATCCCGCAGGATCTGAAGTTCAAGGGCGAGAAGTGCCGCACC GTGATTGGCAAGCGCAACCGCATCCGCGAGCACGTGACCGTGAACGCGGGCACCGAAGGCGGCGGCGGCGTGACCCGGAT CGGGGATGACGGGCTGTTCATGGCTGGCTGCCACATCGCCCATGACGCGCAGGTGGGCGACCGTGTGATCGTGGTGAATT CTGCCGCAATTGCAGGGCATTGTGTGCTTGAGGATGACGTGATCATCGGCGGGCTGTCGGGCATCCATCAATGGGTGCGC ATCGGCCGCGGCGCAATCATCGGCGCTGTCACCATGGTGACGAATGACGTTATTCCCTACGGTCTCGTGCAGGCCTCGCG CGGCGAATTGGATGGGCTCAATCTTGTGGGCCTGAAACGGCGCGGTGTGAGTCGCGCGGACATCACCGCCCTTCGTGCAG CCTTTCAGATGCTGGCGCAGGGCGAGGGGACGTTCTCCGAACGCGCCCGCCGCTTGGGCGATGAAAACGACAGCGAATAT GTGCAGGAAATCGTGGCCTTTATCACCGGTCAGAGCGACCGCCACTTCCTGACTCCCGGCGGCTGA
Upstream 100 bases:
>100_bases GCAAGATCTTCAAGTTTTCCGGTCGCGCCACCGTTGATGGCGAACTCGCCGCTGAGGCCGAGTTCACCGCGATGATCGAC CGGGACGGAAAGGACGGCTG
Downstream 100 bases:
>100_bases GAAAGGTCCGATTATGATTGCACTCATTGCTGGTCGCGGTGCCTTGCCTGCGGAGCTCATCGCACGTCTGCCCGAGCGCC CAATGGTTTGCGCCATGTCC
Product: UDP-N-acetylglucosamine acyltransferase
Products: NA
Alternate protein names: UDP-N-acetylglucosamine acyltransferase [H]
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSTIHPSAIIEDGAKIGEGCEIGPFCIVGAEVVLGDRVVLKSHVVVTGDTEIGDDTVVFSFSVLGEIPQDLKFKGEKCRT VIGKRNRIREHVTVNAGTEGGGGVTRIGDDGLFMAGCHIAHDAQVGDRVIVVNSAAIAGHCVLEDDVIIGGLSGIHQWVR IGRGAIIGAVTMVTNDVIPYGLVQASRGELDGLNLVGLKRRGVSRADITALRAAFQMLAQGEGTFSERARRLGDENDSEY VQEIVAFITGQSDRHFLTPGG
Sequences:
>Translated_261_residues MSTIHPSAIIEDGAKIGEGCEIGPFCIVGAEVVLGDRVVLKSHVVVTGDTEIGDDTVVFSFSVLGEIPQDLKFKGEKCRT VIGKRNRIREHVTVNAGTEGGGGVTRIGDDGLFMAGCHIAHDAQVGDRVIVVNSAAIAGHCVLEDDVIIGGLSGIHQWVR IGRGAIIGAVTMVTNDVIPYGLVQASRGELDGLNLVGLKRRGVSRADITALRAAFQMLAQGEGTFSERARRLGDENDSEY VQEIVAFITGQSDRHFLTPGG >Mature_260_residues STIHPSAIIEDGAKIGEGCEIGPFCIVGAEVVLGDRVVLKSHVVVTGDTEIGDDTVVFSFSVLGEIPQDLKFKGEKCRTV IGKRNRIREHVTVNAGTEGGGGVTRIGDDGLFMAGCHIAHDAQVGDRVIVVNSAAIAGHCVLEDDVIIGGLSGIHQWVRI GRGAIIGAVTMVTNDVIPYGLVQASRGELDGLNLVGLKRRGVSRADITALRAAFQMLAQGEGTFSERARRLGDENDSEYV QEIVAFITGQSDRHFLTPGG
Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]
COG id: COG1043
COG function: function code M; Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family. LpxA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786378, Length=244, Percent_Identity=46.3114754098361, Blast_Score=223, Evalue=8e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001451 - InterPro: IPR018357 - InterPro: IPR010137 - InterPro: IPR011004 [H]
Pfam domain/function: PF00132 Hexapep [H]
EC number: =2.3.1.129 [H]
Molecular weight: Translated: 27585; Mature: 27454
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00101 HEXAPEP_TRANSFERASES ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIHPSAIIEDGAKIGEGCEIGPFCIVGAEVVLGDRVVLKSHVVVTGDTEIGDDTVVFS CCCCCCHHHHHCCCCCCCCCCCCCEEEECCEEEECCEEEEEEEEEEECCCCCCCCEEEEE FSVLGEIPQDLKFKGEKCRTVIGKRNRIREHVTVNAGTEGGGGVTRIGDDGLFMAGCHIA EHHHHCCCHHHCCCCHHHHHHHHCHHHHHEEEEEECCCCCCCCEEEECCCCEEEECEEEE HDAQVGDRVIVVNSAAIAGHCVLEDDVIIGGLSGIHQWVRIGRGAIIGAVTMVTNDVIPY ECCCCCCEEEEEECCEEEEEEEEECCEEEECHHHHHHHHHHCCCHHHHHHHHHHCCCCCH GLVQASRGELDGLNLVGLKRRGVSRADITALRAAFQMLAQGEGTFSERARRLGDENDSEY HHEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHH VQEIVAFITGQSDRHFLTPGG HHHHHHHHCCCCCCEEECCCC >Mature Secondary Structure STIHPSAIIEDGAKIGEGCEIGPFCIVGAEVVLGDRVVLKSHVVVTGDTEIGDDTVVFS CCCCCHHHHHCCCCCCCCCCCCCEEEECCEEEECCEEEEEEEEEEECCCCCCCCEEEEE FSVLGEIPQDLKFKGEKCRTVIGKRNRIREHVTVNAGTEGGGGVTRIGDDGLFMAGCHIA EHHHHCCCHHHCCCCHHHHHHHHCHHHHHEEEEEECCCCCCCCEEEECCCCEEEECEEEE HDAQVGDRVIVVNSAAIAGHCVLEDDVIIGGLSGIHQWVRIGRGAIIGAVTMVTNDVIPY ECCCCCCEEEEEECCEEEEEEEEECCEEEECHHHHHHHHHHCCCHHHHHHHHHHCCCCCH GLVQASRGELDGLNLVGLKRRGVSRADITALRAAFQMLAQGEGTFSERARRLGDENDSEY HHEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHH VQEIVAFITGQSDRHFLTPGG HHHHHHHHCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA