Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081244

Identifier: 99081244

GI number: 99081244

Start: 1496806

End: 1497594

Strand: Reverse

Name: 99081244

Synonym: TM1040_1403

Alternate gene names: NA

Gene position: 1497594-1496806 (Counterclockwise)

Preceding gene: 99081245

Following gene: 99081243

Centisome position: 46.79

GC content: 63.5

Gene sequence:

>789_bases
ATGATTGCACTCATTGCTGGTCGCGGTGCCTTGCCTGCGGAGCTCATCGCACGTCTGCCCGAGCGCCCAATGGTTTGCGC
CATGTCCGGATCAGAACCGGATCAGGTCGAGGCGGATGTGACCTTTCGCCTCGAACAGCTTGGCAGCTTTCTGGAGGAGC
TGAAGTCCAAAGGGATCACGCAGGTCTGCATGGCCGGGGCAGTGACGCGGCCACAGATCGACCCAAGCGCGATTGATGGC
GCAACCTTGCCGCTGGTGCCCGTGTTGCAAGCGGCCATCGCCGCAGGCGACGACGGTGCCTTGCGTGCGGTGATCGGCAT
TCTCGAACAGAGCGGTTTTGAGGTGAAGGCCGCACATGAGATCGCGCCGGATCTTCTGATGCCCGAGGGCGTGCCTACCA
AGGTCAAACCTGGCGAGATCGACAAGGCGGATGCTGAACGTGCCGCCGTGATTGCCTTTGGTCTTAGCGCCGCAGACATC
GGTCAAGCCTGTGCCGTGCGCTCCGGGCAAGCGATTGCGATTGAGACGCTTTTTGGCACCGACTGGATGCTCGAAAGCCT
TGCGCAACGCCCGGACGGGCAGGGCGGTCTGTTCTACAAGGCCCCAAAGGCCGGGCAGGACAGACGCGCGGATCTGCCCA
CCATCGGACCGGCAACCGTCGCAGGTGCAGCACGCGCTGGTCTCAACGGGATTGTGCTCGAGGCGGAGGGCGTGATTGTG
CTCGACCGAGAAGAGGTAGTGGCCGCCTGCGACCGCCACGGCCTGTTCCTCTGGTTGCGCGAGGCCTGA

Upstream 100 bases:

>100_bases
GATGAAAACGACAGCGAATATGTGCAGGAAATCGTGGCCTTTATCACCGGTCAGAGCGACCGCCACTTCCTGACTCCCGG
CGGCTGAGAAAGGTCCGATT

Downstream 100 bases:

>100_bases
GCCTTGGGCCTCAGGGTGTTTGTCCTTGCGGGGGAGCCTTCGGGTGACCGCCTTGGCGCGGCGCTCATGCGGGGCCTCAA
AACGCTCGCGCCCGACGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIALIAGRGALPAELIARLPERPMVCAMSGSEPDQVEADVTFRLEQLGSFLEELKSKGITQVCMAGAVTRPQIDPSAIDG
ATLPLVPVLQAAIAAGDDGALRAVIGILEQSGFEVKAAHEIAPDLLMPEGVPTKVKPGEIDKADAERAAVIAFGLSAADI
GQACAVRSGQAIAIETLFGTDWMLESLAQRPDGQGGLFYKAPKAGQDRRADLPTIGPATVAGAARAGLNGIVLEAEGVIV
LDREEVVAACDRHGLFLWLREA

Sequences:

>Translated_262_residues
MIALIAGRGALPAELIARLPERPMVCAMSGSEPDQVEADVTFRLEQLGSFLEELKSKGITQVCMAGAVTRPQIDPSAIDG
ATLPLVPVLQAAIAAGDDGALRAVIGILEQSGFEVKAAHEIAPDLLMPEGVPTKVKPGEIDKADAERAAVIAFGLSAADI
GQACAVRSGQAIAIETLFGTDWMLESLAQRPDGQGGLFYKAPKAGQDRRADLPTIGPATVAGAARAGLNGIVLEAEGVIV
LDREEVVAACDRHGLFLWLREA
>Mature_262_residues
MIALIAGRGALPAELIARLPERPMVCAMSGSEPDQVEADVTFRLEQLGSFLEELKSKGITQVCMAGAVTRPQIDPSAIDG
ATLPLVPVLQAAIAAGDDGALRAVIGILEQSGFEVKAAHEIAPDLLMPEGVPTKVKPGEIDKADAERAAVIAFGLSAADI
GQACAVRSGQAIAIETLFGTDWMLESLAQRPDGQGGLFYKAPKAGQDRRADLPTIGPATVAGAARAGLNGIVLEAEGVIV
LDREEVVAACDRHGLFLWLREA

Specific function: Unknown

COG id: COG3494

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27265; Mature: 27265

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALIAGRGALPAELIARLPERPMVCAMSGSEPDQVEADVTFRLEQLGSFLEELKSKGIT
CEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
QVCMAGAVTRPQIDPSAIDGATLPLVPVLQAAIAAGDDGALRAVIGILEQSGFEVKAAHE
HHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEHHH
IAPDLLMPEGVPTKVKPGEIDKADAERAAVIAFGLSAADIGQACAVRSGQAIAIETLFGT
CCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCC
DWMLESLAQRPDGQGGLFYKAPKAGQDRRADLPTIGPATVAGAARAGLNGIVLEAEGVIV
HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEEE
LDREEVVAACDRHGLFLWLREA
ECHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MIALIAGRGALPAELIARLPERPMVCAMSGSEPDQVEADVTFRLEQLGSFLEELKSKGIT
CEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
QVCMAGAVTRPQIDPSAIDGATLPLVPVLQAAIAAGDDGALRAVIGILEQSGFEVKAAHE
HHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEHHH
IAPDLLMPEGVPTKVKPGEIDKADAERAAVIAFGLSAADIGQACAVRSGQAIAIETLFGT
CCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCC
DWMLESLAQRPDGQGGLFYKAPKAGQDRRADLPTIGPATVAGAARAGLNGIVLEAEGVIV
HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEEE
LDREEVVAACDRHGLFLWLREA
ECHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA