| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081213
Identifier: 99081213
GI number: 99081213
Start: 1464883
End: 1465929
Strand: Reverse
Name: 99081213
Synonym: TM1040_1372
Alternate gene names: NA
Gene position: 1465929-1464883 (Counterclockwise)
Preceding gene: 99081215
Following gene: 99081212
Centisome position: 45.8
GC content: 57.59
Gene sequence:
>1047_bases ATGAATGGAGTAACCCGGCCGTGTCTGCCGGATTGGGTACCTGTTGAAATCTCTCGTTATCTCGCGCACACGGTCTCTCA GATTTCGATCCGCGAACTGGCGCGCAGCGCGGCGTGTCACCCGTCGACCGTTATGCGCCAGATCCACCGTGTCGAGCAAC TGCGCGAAGATCCATTGATGGACGGCGCATTGCAGCGCTTGTCTGAACTCTGTGATGCGGATTCAGATCCATCTGGGGAA ATTTCCCATTACAAAGAAGAAGATGCAGTGCGAAGTTTAACGCTTCTCTCATATGGTGGTGCGGTGCTTGCGGTTGGGCG GGATATGCCCAAGGCGGTGATCCTGCGCGAGGTCGGGTCCGAGGTGCACAAAACCGTCATAGAGCGTAGCCTTGCCGAAA TCCTTGCGCTGCGCGATTGGGTCAGCTGTTTTTCCTCTGGCCGCGTCTATCGCTATCGGCTCAGCAAGGACGGTCGTAGC GCACTTGCCCAGCTGACAGCAAAGGCCGAGGCGTGTCACCGTTCACGCATGGAAACGACAACGCAATCGGGCCTTGCAGG ACAGATTGCGGAGTTTTCACAGTCTGACGCTCTTAACGCAAAACGAGCGCGGTATGGCCAGCAGGACACACCGTTGCAAA CCCTTGCGCGGTTGGTAGACCGTGATGGAAATTCTTTTCTGAGCAAAGAGATGGTACGCGCAGGTGAACGATTAAGAGAA GATTTCGAACTCGCGCAGATTGGTCAGCATGTCGCCACGGAGCGCCGGGTTTTTGACGACAATCCGCGCGCGGCAGAGCA TGCTACGGGTCCGACAAACGCCCTCAGCCGCGACGCCTTCCAGCGCGCCACAACCGCGCTGTGTGCACTCGGGCCGGGCT TGAGCGATATTGCCCTGCGCTGCTGCTGTCATCTCGAGGGGCTCGAGGTGGCGGAACGCGAACTCGGCTGGTCCGCAAGG TCGGGCAAGATCGTTCTCAGAATTGCGCTTCAGCAATTGCATCACCACTATGAATCTTTGCCGCCGCAAACCCAAATGAT CGGATGA
Upstream 100 bases:
>100_bases GAAGTTTTAACGTTCAGGAATGGGGAGAGATCAAGGTCATGATGCGTGTCATCCGGCCGGTGATCGGTGGCGTGGGCCTG GGCAAAGCTAGGGGTCAGCT
Downstream 100 bases:
>100_bases TTGCTGTTTCAAATGCGGATTTCATTCTGCCTTGGGTGGTAAAAGTTTCGGGCAAGTGTCCGCGCGCCTGAGTTCCAAGT CCGTTGCAGAACCAAGAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSELCDADSDPSGE ISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRS ALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSAR SGKIVLRIALQQLHHHYESLPPQTQMIG
Sequences:
>Translated_348_residues MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSELCDADSDPSGE ISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRS ALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSAR SGKIVLRIALQQLHHHYESLPPQTQMIG >Mature_348_residues MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSELCDADSDPSGE ISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRS ALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSAR SGKIVLRIALQQLHHHYESLPPQTQMIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38549; Mature: 38549
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH DGALQRLSELCDADSDPSGEISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGS HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH EVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRSALAQLTAKAEACHRSRMETT HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH TQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE HHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALR HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH CCCHLEGLEVAERELGWSARSGKIVLRIALQQLHHHYESLPPQTQMIG HHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH DGALQRLSELCDADSDPSGEISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGS HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH EVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRSALAQLTAKAEACHRSRMETT HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH TQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE HHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALR HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH CCCHLEGLEVAERELGWSARSGKIVLRIALQQLHHHYESLPPQTQMIG HHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA