| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081215
Identifier: 99081215
GI number: 99081215
Start: 1466516
End: 1468060
Strand: Reverse
Name: 99081215
Synonym: TM1040_1374
Alternate gene names: NA
Gene position: 1468060-1466516 (Counterclockwise)
Preceding gene: 99081225
Following gene: 99081213
Centisome position: 45.86
GC content: 60.26
Gene sequence:
>1545_bases ATGACGGATGCAGCACCGCGTCGTCGAAGCCGGGGTGGCGGTGGCGCCGCCCGTCGTGCCGAACGCACCAGCGTCAAGAT CGAGACAGCGAAGTATATCGAGCGCAATATCCCGAACTACGAGGTGCTGACAGAAGAGGCGCTCGAGGTCATCGAGACAA ACGCCGAGACCATCCTCGAGGAGGTTGGCGTCAATTTCGTGGATAACCCGGCCGCGCTTGAACGCTGGCGCGACGCGGGC GCCGATGTTCAGGGCGAGCGGGTCCGGATCCCGCGTGGTCTGGCGCGCAAACTCTGCGAAACTGCGCCGAGCCAGTTTAC CCAGCACGCGCGCAACCCCGAGAAATCCGTTGAGATCGGCGGCAAGAACCTCGTGCTCGCGCCGATCTACGGCCCGCCGT TTGTGCGCGATGCCAATGGTGGCCGGCGCTACGCAACGCTGGAGGATTTCCAGAAGTTCGTGAAGCTCGGCTATATGTCG AAATGGCTGCATCACTCTGGCGGGACCGTCTGCGAGCCCACCGATGTTCCGGTGAACAAACGCCACCTCGACATGTTGAT GGCGCATATCGAGCTCTCGGATAAACCCTTCATGGGGTCGGTTACGGAACCGAGCCGTGCGCAGGACACCGTTGATATGT GCGGCATCCTGTTCGGCAAGGATTTCGTGCAGGAAAATACTGTCACCACCTCGCTGATCAACATCAACTCGCCAATGACG TTTGACGATGTGATGATGGGCGCGCTTGAGGTTTATGCCAAGAACAACCAGGCCTGCATCATTTCGCCCTTCATCGTGGG CGGTGCAATGGCTCCGGTCACCATCGCGGGCACATTGACACAGGTCCTGGCAGAAGTTCTGGCCGGTGTGGCCTATAGCC AGCTGATCCGTCCCGGTGCGCCGGTGATCTTCGGGGCCTTTGTGTCGTCGATCGATATGAACTCCGGTGCGCCGACCTTT GGCACGCCCGAAGCCTCGATGGTGACCTATGGCGCCGGGCAGCTGGCGCGGCGCCTCAATCTGCCCTTCCGCTCGGCGGG GTCGTTCTGCGGCTCCAAACTCCCCGATGCGCAGGCGGCCTATGAGACGGCGAACTCGCTCAACATGGGGCTCTTGTCCG GCGTGAACTTCATGCTGCATTCTTGCGGCTGGCTCGAAGGCGGTCTGGTGGCCGATTTTGAGAAATTCGTGATGGACGCC GATCAGCTCGGCGTGCTGCATGGACTGGCCAAAGGCATCCAGATGGATGAAAACGGGCAGGGCCTTGATGCGATCCGTGA GGTTGGCCCGGGAGGTCACTACCTAGGATGTGCCCATACGCAAGCGAACTTCAAAACGGCGTTCTGGAAGTCCAACCTCC TGGATTACAAGCCTTTTGAGCAGTGGGAAGAAGAAGGCGCGCGCGACACCTACAAACTTGCCTCGGCGCGTGTGGAACAT CTGCTCGCCACCTACAAACAGCCCGAACTGGATCCCGCGATCCGTGAGGCGCTGATGGCTTACATCGCAGAAAAGAAAGC CTCGATGCCCGACGCCTTTATGTAA
Upstream 100 bases:
>100_bases ATGTCGCATTTATGCGAGAATAGCCGTTATCCTTCGGCGCGGCCCAGTCTTGCTCCGATAATCAGAATGCACAGAATTCA TACTGTCGTGAGGAAGAACA
Downstream 100 bases:
>100_bases GCGATCCGTGGTATTGAGTTCAAACGGCGTCCTGCGGGGCGCCGTTTTTTGTTGCGCGTCGGGGCTGCGAGCGCGACGCC AGATAGAGACGGCTTTCGGC
Product: trimethylamine methyltransferase
Products: NA
Alternate protein names: TMA methyltransferase [H]
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MTDAAPRRRSRGGGGAARRAERTSVKIETAKYIERNIPNYEVLTEEALEVIETNAETILEEVGVNFVDNPAALERWRDAG ADVQGERVRIPRGLARKLCETAPSQFTQHARNPEKSVEIGGKNLVLAPIYGPPFVRDANGGRRYATLEDFQKFVKLGYMS KWLHHSGGTVCEPTDVPVNKRHLDMLMAHIELSDKPFMGSVTEPSRAQDTVDMCGILFGKDFVQENTVTTSLININSPMT FDDVMMGALEVYAKNNQACIISPFIVGGAMAPVTIAGTLTQVLAEVLAGVAYSQLIRPGAPVIFGAFVSSIDMNSGAPTF GTPEASMVTYGAGQLARRLNLPFRSAGSFCGSKLPDAQAAYETANSLNMGLLSGVNFMLHSCGWLEGGLVADFEKFVMDA DQLGVLHGLAKGIQMDENGQGLDAIREVGPGGHYLGCAHTQANFKTAFWKSNLLDYKPFEQWEEEGARDTYKLASARVEH LLATYKQPELDPAIREALMAYIAEKKASMPDAFM
Sequences:
>Translated_514_residues MTDAAPRRRSRGGGGAARRAERTSVKIETAKYIERNIPNYEVLTEEALEVIETNAETILEEVGVNFVDNPAALERWRDAG ADVQGERVRIPRGLARKLCETAPSQFTQHARNPEKSVEIGGKNLVLAPIYGPPFVRDANGGRRYATLEDFQKFVKLGYMS KWLHHSGGTVCEPTDVPVNKRHLDMLMAHIELSDKPFMGSVTEPSRAQDTVDMCGILFGKDFVQENTVTTSLININSPMT FDDVMMGALEVYAKNNQACIISPFIVGGAMAPVTIAGTLTQVLAEVLAGVAYSQLIRPGAPVIFGAFVSSIDMNSGAPTF GTPEASMVTYGAGQLARRLNLPFRSAGSFCGSKLPDAQAAYETANSLNMGLLSGVNFMLHSCGWLEGGLVADFEKFVMDA DQLGVLHGLAKGIQMDENGQGLDAIREVGPGGHYLGCAHTQANFKTAFWKSNLLDYKPFEQWEEEGARDTYKLASARVEH LLATYKQPELDPAIREALMAYIAEKKASMPDAFM >Mature_513_residues TDAAPRRRSRGGGGAARRAERTSVKIETAKYIERNIPNYEVLTEEALEVIETNAETILEEVGVNFVDNPAALERWRDAGA DVQGERVRIPRGLARKLCETAPSQFTQHARNPEKSVEIGGKNLVLAPIYGPPFVRDANGGRRYATLEDFQKFVKLGYMSK WLHHSGGTVCEPTDVPVNKRHLDMLMAHIELSDKPFMGSVTEPSRAQDTVDMCGILFGKDFVQENTVTTSLININSPMTF DDVMMGALEVYAKNNQACIISPFIVGGAMAPVTIAGTLTQVLAEVLAGVAYSQLIRPGAPVIFGAFVSSIDMNSGAPTFG TPEASMVTYGAGQLARRLNLPFRSAGSFCGSKLPDAQAAYETANSLNMGLLSGVNFMLHSCGWLEGGLVADFEKFVMDAD QLGVLHGLAKGIQMDENGQGLDAIREVGPGGHYLGCAHTQANFKTAFWKSNLLDYKPFEQWEEEGARDTYKLASARVEHL LATYKQPELDPAIREALMAYIAEKKASMPDAFM
Specific function: Catalyzes probably the transfer of a methyl group from trimethylamine to the corrinoid cofactor of mttC [H]
COG id: COG5598
COG function: function code H; Trimethylamine:corrinoid methyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trimethylamine methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010426 [H]
Pfam domain/function: PF06253 MTTB [H]
EC number: NA
Molecular weight: Translated: 55982; Mature: 55851
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAAPRRRSRGGGGAARRAERTSVKIETAKYIERNIPNYEVLTEEALEVIETNAETILE CCCCCCCHHCCCCCHHHHHHHHCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHH EVGVNFVDNPAALERWRDAGADVQGERVRIPRGLARKLCETAPSQFTQHARNPEKSVEIG HHCCCCCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHHEEEC GKNLVLAPIYGPPFVRDANGGRRYATLEDFQKFVKLGYMSKWLHHSGGTVCEPTDVPVNK CCCEEEEECCCCCCEECCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH RHLDMLMAHIELSDKPFMGSVTEPSRAQDTVDMCGILFGKDFVQENTVTTSLININSPMT HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC FDDVMMGALEVYAKNNQACIISPFIVGGAMAPVTIAGTLTQVLAEVLAGVAYSQLIRPGA HHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PVIFGAFVSSIDMNSGAPTFGTPEASMVTYGAGQLARRLNLPFRSAGSFCGSKLPDAQAA CHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCHHHHHHHHCCCCCCHHHH YETANSLNMGLLSGVNFMLHSCGWLEGGLVADFEKFVMDADQLGVLHGLAKGIQMDENGQ HHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC GLDAIREVGPGGHYLGCAHTQANFKTAFWKSNLLDYKPFEQWEEEGARDTYKLASARVEH CHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH LLATYKQPELDPAIREALMAYIAEKKASMPDAFM HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TDAAPRRRSRGGGGAARRAERTSVKIETAKYIERNIPNYEVLTEEALEVIETNAETILE CCCCCCHHCCCCCHHHHHHHHCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHH EVGVNFVDNPAALERWRDAGADVQGERVRIPRGLARKLCETAPSQFTQHARNPEKSVEIG HHCCCCCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHHEEEC GKNLVLAPIYGPPFVRDANGGRRYATLEDFQKFVKLGYMSKWLHHSGGTVCEPTDVPVNK CCCEEEEECCCCCCEECCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH RHLDMLMAHIELSDKPFMGSVTEPSRAQDTVDMCGILFGKDFVQENTVTTSLININSPMT HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC FDDVMMGALEVYAKNNQACIISPFIVGGAMAPVTIAGTLTQVLAEVLAGVAYSQLIRPGA HHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PVIFGAFVSSIDMNSGAPTFGTPEASMVTYGAGQLARRLNLPFRSAGSFCGSKLPDAQAA CHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCHHHHHHHHCCCCCCHHHH YETANSLNMGLLSGVNFMLHSCGWLEGGLVADFEKFVMDADQLGVLHGLAKGIQMDENGQ HHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC GLDAIREVGPGGHYLGCAHTQANFKTAFWKSNLLDYKPFEQWEEEGARDTYKLASARVEH CHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH LLATYKQPELDPAIREALMAYIAEKKASMPDAFM HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA