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The map label for this gene is hfq [H]

Identifier: 99081197

GI number: 99081197

Start: 1448057

End: 1448296

Strand: Reverse

Name: hfq [H]

Synonym: TM1040_1356

Alternate gene names: 99081197

Gene position: 1448296-1448057 (Counterclockwise)

Preceding gene: 99081198

Following gene: 99081196

Centisome position: 45.25

GC content: 50.83

Gene sequence:

>240_bases
ATGGCTTCGGACAGACAGAATCTTCAGGACGCTTTCCTGAACCACGTTCGCAAAACAAAAGTTCCAGTCACAATTTTCTT
GATCAACGGTGTGAAACTGCAGGGCGTGATCACCTGGTTCGACAACTTCTGTGTGTTGCTGCGCCGCGATGGCCAGTCGC
AGCTTGTCTACAAGCATGCGATTTCCACCATCATGCCGGCCCAGCCCATCAGCCTATATGAAGGTGAAGACTCCAATTGA

Upstream 100 bases:

>100_bases
GTTTTTCGGGTGGAAACCCGCGAAATCTGCGTCCATACTCGCCATAAGGGACGCGTTGGGCCGCAGCGCGTGGCAAGAAC
AAAGGCGAGATAATAAGCAA

Downstream 100 bases:

>100_bases
TGGAGCATGACAGGAAGCAGACCCGGGCTTGGGTTCTGCATCCGGATATCAAGTCAGATAGGGATCGTCGCGACGCAGTT
CCGGCGCTAGAGGAAGGTGT

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHAISTIMPAQPISLYEGEDSN

Sequences:

>Translated_79_residues
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHAISTIMPAQPISLYEGEDSN
>Mature_78_residues
ASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHAISTIMPAQPISLYEGEDSN

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=68, Percent_Identity=55.8823529411765, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8991; Mature: 8860

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCHHHHHHH
ISTIMPAQPISLYEGEDSN
HHHHCCCCCCEEECCCCCC
>Mature Secondary Structure 
ASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
CCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCHHHHHHH
ISTIMPAQPISLYEGEDSN
HHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA