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The map label for this gene is ydcN [C]

Identifier: 99081186

GI number: 99081186

Start: 1432942

End: 1433571

Strand: Reverse

Name: ydcN [C]

Synonym: TM1040_1345

Alternate gene names: 99081186

Gene position: 1433571-1432942 (Counterclockwise)

Preceding gene: 99081190

Following gene: 99081183

Centisome position: 44.79

GC content: 59.37

Gene sequence:

>630_bases
ATGCAGGAACGCGACCCGAAGAAACTCATCTCTATCGCGCACGCCAATGGCGATCAAAGCGCGCCCGAAGCATTAGATCT
GGGCGCGCGTGTGCGCGAGCTGCGCAAGCAGCGGGACTGGACACTCGAACATGCCGCCAGCCAGGCCGGACTTGCGCGAT
CCACTTTGTCCAAGATCGAAAACGGCCAGATGTCGCCGACCTATGACGCGCTCAAGAAGCTGGCGGTCGGCCTGCAGATT
TCCGTGCCGCAGCTGTTTACGCCGCCGCAGCGCGATCAGGTCAATGGCCGCATGATCGTGACCAAATTCGGCGAGGGCTC
TGCGCATGCCACGGCAACCTACGAGCATGAACTGCTGGCAGATGGGCTGACACGCAAGAACATGCTGCCCTATCGCGCCC
GTGTGCGCGCGCGCTCCATGGATGAATTTGATGGCTGGGTGCGCCATGACGGCGAGGAATTTATGTATGTCCTGACGGGG
GTCGTCAAACTCTATACAGAGTTTTACGAACCCGTGGAGATGCGCCGAGGCGACAGCGCCTATTATGACGGCGCCATGGG
GCACAATGTGATCTCGGTCAGTTCCGAAGACGCGACTATTCTCTGGGTGACATCGCTCAATCAGATGTGA

Upstream 100 bases:

>100_bases
CGGTGTCAAAAATGGAAAGCATGGTGAAATGCCTATCCTGAGGTGCGCATTCGAGCAAGTCGGCGTTGCAAGGCCCTGCG
TGCAGACTTATAGGGTTGCT

Downstream 100 bases:

>100_bases
GCTGGCAATCCTAGCGGAAGTCTTTCACGGACCTGCCTGCTGGCGGGGCCGGTAGAGGTCAACGCGTCAGGCTGAGCTCC
GCTCTGAGGCTTTCCAGATA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Domain-Containing Protein; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator MerR Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; XRE Family-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MQERDPKKLISIAHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQI
SVPQLFTPPQRDQVNGRMIVTKFGEGSAHATATYEHELLADGLTRKNMLPYRARVRARSMDEFDGWVRHDGEEFMYVLTG
VVKLYTEFYEPVEMRRGDSAYYDGAMGHNVISVSSEDATILWVTSLNQM

Sequences:

>Translated_209_residues
MQERDPKKLISIAHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQI
SVPQLFTPPQRDQVNGRMIVTKFGEGSAHATATYEHELLADGLTRKNMLPYRARVRARSMDEFDGWVRHDGEEFMYVLTG
VVKLYTEFYEPVEMRRGDSAYYDGAMGHNVISVSSEDATILWVTSLNQM
>Mature_209_residues
MQERDPKKLISIAHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQI
SVPQLFTPPQRDQVNGRMIVTKFGEGSAHATATYEHELLADGLTRKNMLPYRARVRARSMDEFDGWVRHDGEEFMYVLTG
VVKLYTEFYEPVEMRRGDSAYYDGAMGHNVISVSSEDATILWVTSLNQM

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23490; Mature: 23490

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQERDPKKLISIAHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIE
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
NGQMSPTYDALKKLAVGLQISVPQLFTPPQRDQVNGRMIVTKFGEGSAHATATYEHELLA
CCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHH
DGLTRKNMLPYRARVRARSMDEFDGWVRHDGEEFMYVLTGVVKLYTEFYEPVEMRRGDSA
CCCHHCCCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YYDGAMGHNVISVSSEDATILWVTSLNQM
CCCCCCCCCEEEECCCCCEEEEEECCCCC
>Mature Secondary Structure
MQERDPKKLISIAHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIE
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
NGQMSPTYDALKKLAVGLQISVPQLFTPPQRDQVNGRMIVTKFGEGSAHATATYEHELLA
CCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHH
DGLTRKNMLPYRARVRARSMDEFDGWVRHDGEEFMYVLTGVVKLYTEFYEPVEMRRGDSA
CCCHHCCCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YYDGAMGHNVISVSSEDATILWVTSLNQM
CCCCCCCCCEEEECCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA