| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081165
Identifier: 99081165
GI number: 99081165
Start: 1409890
End: 1412040
Strand: Reverse
Name: 99081165
Synonym: TM1040_1324
Alternate gene names: NA
Gene position: 1412040-1409890 (Counterclockwise)
Preceding gene: 99081171
Following gene: 99081164
Centisome position: 44.11
GC content: 48.16
Gene sequence:
>2151_bases ATGAAAATCCCTCGCTGGAGGTGGAAGAGTATCTATACTACAAACTATGACACTCTCGTAGAACAATCGTTCGATAGTGC CAAAAAGAGGTGTCGAGTATATTCTTCTAACTTTGACTTCCATATAGATGAGGAAGAATACGATTGCGAGCTATTTAAGA TTCATGGGACAATTGAAAAAGATATTTCAACCGGCCATCATAGCAGAATTATCCTGACTGTGGATGACTACGATCATACT GAAGAGTTTCGAGAACAGCTTTATGATCGGATGCGCGGCGATCTGGCAGGTGCCGATCTTGTGATAATTGGGCAATCACT GTCCGATCCAGACATGGATACTCTGGTGAGGCGGGCTGTAAAGATCAATGAAAAAGCGCTATCCCCTGGTCAGATCACAC TTCTGATCTACTCTGAAAACCAAAGTCGTGCGCTCCTTCAAGAACGCAAAGGGTTGCGTGTAGTCTTCGGCGGAATTGAC GAGTTCTTCACGCGACTCGACAAAAGACCGCCAAAGATCGCACCCGTCATGATTTCGAAAGACGACGAGGCGCTAATCGG CACGCATATATCAAACTCTATTGTCGAAGTGTCGGAAGTTTCCAATGGAGCCGAAGCCGACGTCAGTTCGATGTTCAACG GCTGGCCTGCAACTCACCGAGAGGTCGAAGCGGGCCTAACATTCGAACGCGATATCTCACGTGAGGTTGCTAAACACTTT GAAGATCCTTGTACCCTTTCTGGGGTTATTCTAGGGGCTGCCGGAGTAGGCAAGTCAACCGCTGCCAGACAGACATTACA ACTCCTCCGCCGCGCAGGCTTCAGGGCCTGGGAGCATGTGAATGAACATACTCTTAGCGTCGCCAACTGGAGAAAGATTG CCGGAAACCTCAAGGAAAGTGAGCTCTTAGGTGTCCTGCTTGTAGACGAAGCACATTCTCATTTGCACCAACTTAATGAG CTGATGGACCTGCTTGTCGCAGATGACAATCCGCACCTGAAAATTCTTGCTGTTTCAACAAAAAGCAATTGGATACCTCG AAGCAAAACACCAAACTTCAATCGTTGTGGGAAGGATTTTTGGCTTTCAAAACTGTCTGTAGATGAGATCGACCGGCTCT TGAATTTAATTGAACGACAGCCGCGCATCCGTGAGCTTGTCGAGGAGTCTTTTAGCGGATTCAACAAAGGCGAGCGCAGA AGGCGGTTGGTGCATAGATGCGAAGCAGACATGTTTGTTTGTCTGAAGAACATTTTTGCGTCTGAGTCGTTCGACGATAT CATCCTTCGAGAATTTGCTGGCTTGGACGCCATCCCTCAGGACATTTATAAACACGTCGCAGCTATGGAGACACTCGGAG TACGCGTCCACCGCCAACTTGCCGTTCGCATGCTTAACGTTGAAGCGAGCAATATCTCAAATATTTTGACTTCCTTGGAT GATATCGTCGAAGAATATCCGGTTGATCGACGCAAAGGAATATATGGGTGGAAGTGCAGGCATGGTGTCATTTCAGAAAT TGTCACTAGATACAAATTTGGGGATCTCGAACAGATAATATCCCTCCTTGATCACGTCATAGATAACATTTCTCCGTCCT ACGATATTGAGGTTAGAACCCTGCGCGAGCTTTGCAATCTCGACGGCGGAATTTCACGAATTCCCGAAAAGAAAGAGCAG AATCGTCTATTGAGGCGAATGATATCCATGGCCCCAGGCGAGAGGGTTCCGCGACATCGGCTGATCAGGAACCTCATCGA CCAAGGTGAGTTTGAGAAAGCGGAAACGGAGATTCGCGTCTTCAACTTTGACTTCGGCTCAGACGGCCCCGTCCATCGCT ATAAAATTAAGTTGATGGTTGCTCGAGCAGCTCGTGCGCCTGGTTTGCTCGATGAGGATAGAATTGTTATTCTTGAGCAA GCCCAAGAACTTGCTTCGACGGGTATCGCCAGGTTTCCGAACAATAAGAGTATTCTGTCCGCATATGCAGAGCTAGGTTT GGAGTATCTTCGTCGAACCGGGTCATACAGCTTTTTCGATGCCTCTATGGATGAGTTGAAGGCTGCGGAAGGCCGACTCG GCGACCCAGATATTACGGCTATGATCAGTCGCTTCGAACGTCGCGCAGCAGGCTCTGAGGCCGAACTCTGA
Upstream 100 bases:
>100_bases GTCCGAAATCACCTTCTTGGCCGAAAAAAAGTCAAGCCGTCGGCAGGTCATTAATGACTTGCGCAAATTTTTCCCACATG TGAAGCCGAAGGGTGGACTC
Downstream 100 bases:
>100_bases AATATCTTGAAGGTAATGAGGTAGGAATTCAGTCCGTGCCGGGCTGCGTCCGATACGATCATCTCTTAAAAGCGTGTACC GATCATCAGCTGTAACTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MKIPRWRWKSIYTTNYDTLVEQSFDSAKKRCRVYSSNFDFHIDEEEYDCELFKIHGTIEKDISTGHHSRIILTVDDYDHT EEFREQLYDRMRGDLAGADLVIIGQSLSDPDMDTLVRRAVKINEKALSPGQITLLIYSENQSRALLQERKGLRVVFGGID EFFTRLDKRPPKIAPVMISKDDEALIGTHISNSIVEVSEVSNGAEADVSSMFNGWPATHREVEAGLTFERDISREVAKHF EDPCTLSGVILGAAGVGKSTAARQTLQLLRRAGFRAWEHVNEHTLSVANWRKIAGNLKESELLGVLLVDEAHSHLHQLNE LMDLLVADDNPHLKILAVSTKSNWIPRSKTPNFNRCGKDFWLSKLSVDEIDRLLNLIERQPRIRELVEESFSGFNKGERR RRLVHRCEADMFVCLKNIFASESFDDIILREFAGLDAIPQDIYKHVAAMETLGVRVHRQLAVRMLNVEASNISNILTSLD DIVEEYPVDRRKGIYGWKCRHGVISEIVTRYKFGDLEQIISLLDHVIDNISPSYDIEVRTLRELCNLDGGISRIPEKKEQ NRLLRRMISMAPGERVPRHRLIRNLIDQGEFEKAETEIRVFNFDFGSDGPVHRYKIKLMVARAARAPGLLDEDRIVILEQ AQELASTGIARFPNNKSILSAYAELGLEYLRRTGSYSFFDASMDELKAAEGRLGDPDITAMISRFERRAAGSEAEL
Sequences:
>Translated_716_residues MKIPRWRWKSIYTTNYDTLVEQSFDSAKKRCRVYSSNFDFHIDEEEYDCELFKIHGTIEKDISTGHHSRIILTVDDYDHT EEFREQLYDRMRGDLAGADLVIIGQSLSDPDMDTLVRRAVKINEKALSPGQITLLIYSENQSRALLQERKGLRVVFGGID EFFTRLDKRPPKIAPVMISKDDEALIGTHISNSIVEVSEVSNGAEADVSSMFNGWPATHREVEAGLTFERDISREVAKHF EDPCTLSGVILGAAGVGKSTAARQTLQLLRRAGFRAWEHVNEHTLSVANWRKIAGNLKESELLGVLLVDEAHSHLHQLNE LMDLLVADDNPHLKILAVSTKSNWIPRSKTPNFNRCGKDFWLSKLSVDEIDRLLNLIERQPRIRELVEESFSGFNKGERR RRLVHRCEADMFVCLKNIFASESFDDIILREFAGLDAIPQDIYKHVAAMETLGVRVHRQLAVRMLNVEASNISNILTSLD DIVEEYPVDRRKGIYGWKCRHGVISEIVTRYKFGDLEQIISLLDHVIDNISPSYDIEVRTLRELCNLDGGISRIPEKKEQ NRLLRRMISMAPGERVPRHRLIRNLIDQGEFEKAETEIRVFNFDFGSDGPVHRYKIKLMVARAARAPGLLDEDRIVILEQ AQELASTGIARFPNNKSILSAYAELGLEYLRRTGSYSFFDASMDELKAAEGRLGDPDITAMISRFERRAAGSEAEL >Mature_716_residues MKIPRWRWKSIYTTNYDTLVEQSFDSAKKRCRVYSSNFDFHIDEEEYDCELFKIHGTIEKDISTGHHSRIILTVDDYDHT EEFREQLYDRMRGDLAGADLVIIGQSLSDPDMDTLVRRAVKINEKALSPGQITLLIYSENQSRALLQERKGLRVVFGGID EFFTRLDKRPPKIAPVMISKDDEALIGTHISNSIVEVSEVSNGAEADVSSMFNGWPATHREVEAGLTFERDISREVAKHF EDPCTLSGVILGAAGVGKSTAARQTLQLLRRAGFRAWEHVNEHTLSVANWRKIAGNLKESELLGVLLVDEAHSHLHQLNE LMDLLVADDNPHLKILAVSTKSNWIPRSKTPNFNRCGKDFWLSKLSVDEIDRLLNLIERQPRIRELVEESFSGFNKGERR RRLVHRCEADMFVCLKNIFASESFDDIILREFAGLDAIPQDIYKHVAAMETLGVRVHRQLAVRMLNVEASNISNILTSLD DIVEEYPVDRRKGIYGWKCRHGVISEIVTRYKFGDLEQIISLLDHVIDNISPSYDIEVRTLRELCNLDGGISRIPEKKEQ NRLLRRMISMAPGERVPRHRLIRNLIDQGEFEKAETEIRVFNFDFGSDGPVHRYKIKLMVARAARAPGLLDEDRIVILEQ AQELASTGIARFPNNKSILSAYAELGLEYLRRTGSYSFFDASMDELKAAEGRLGDPDITAMISRFERRAAGSEAEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81623; Mature: 81623
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIPRWRWKSIYTTNYDTLVEQSFDSAKKRCRVYSSNFDFHIDEEEYDCELFKIHGTIEK CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCHHH DISTGHHSRIILTVDDYDHTEEFREQLYDRMRGDLAGADLVIIGQSLSDPDMDTLVRRAV HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH KINEKALSPGQITLLIYSENQSRALLQERKGLRVVFGGIDEFFTRLDKRPPKIAPVMISK HHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCEEEEECC DDEALIGTHISNSIVEVSEVSNGAEADVSSMFNGWPATHREVEAGLTFERDISREVAKHF CCCCEEEHHHCCHHEEHHHCCCCCHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHC EDPCTLSGVILGAAGVGKSTAARQTLQLLRRAGFRAWEHVNEHTLSVANWRKIAGNLKES CCCCCCHHHEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH ELLGVLLVDEAHSHLHQLNELMDLLVADDNPHLKILAVSTKSNWIPRSKTPNFNRCGKDF HHEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHH WLSKLSVDEIDRLLNLIERQPRIRELVEESFSGFNKGERRRRLVHRCEADMFVCLKNIFA HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC SESFDDIILREFAGLDAIPQDIYKHVAAMETLGVRVHRQLAVRMLNVEASNISNILTSLD CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH DIVEEYPVDRRKGIYGWKCRHGVISEIVTRYKFGDLEQIISLLDHVIDNISPSYDIEVRT HHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHH LRELCNLDGGISRIPEKKEQNRLLRRMISMAPGERVPRHRLIRNLIDQGEFEKAETEIRV HHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEE FNFDFGSDGPVHRYKIKLMVARAARAPGLLDEDRIVILEQAQELASTGIARFPNNKSILS EEECCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCEEEHHHHHHHHHCCHHCCCCCHHHHH AYAELGLEYLRRTGSYSFFDASMDELKAAEGRLGDPDITAMISRFERRAAGSEAEL HHHHHHHHHHHHCCCCCEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKIPRWRWKSIYTTNYDTLVEQSFDSAKKRCRVYSSNFDFHIDEEEYDCELFKIHGTIEK CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCHHH DISTGHHSRIILTVDDYDHTEEFREQLYDRMRGDLAGADLVIIGQSLSDPDMDTLVRRAV HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH KINEKALSPGQITLLIYSENQSRALLQERKGLRVVFGGIDEFFTRLDKRPPKIAPVMISK HHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCEEEEECC DDEALIGTHISNSIVEVSEVSNGAEADVSSMFNGWPATHREVEAGLTFERDISREVAKHF CCCCEEEHHHCCHHEEHHHCCCCCHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHC EDPCTLSGVILGAAGVGKSTAARQTLQLLRRAGFRAWEHVNEHTLSVANWRKIAGNLKES CCCCCCHHHEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH ELLGVLLVDEAHSHLHQLNELMDLLVADDNPHLKILAVSTKSNWIPRSKTPNFNRCGKDF HHEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHH WLSKLSVDEIDRLLNLIERQPRIRELVEESFSGFNKGERRRRLVHRCEADMFVCLKNIFA HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC SESFDDIILREFAGLDAIPQDIYKHVAAMETLGVRVHRQLAVRMLNVEASNISNILTSLD CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH DIVEEYPVDRRKGIYGWKCRHGVISEIVTRYKFGDLEQIISLLDHVIDNISPSYDIEVRT HHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHH LRELCNLDGGISRIPEKKEQNRLLRRMISMAPGERVPRHRLIRNLIDQGEFEKAETEIRV HHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEE FNFDFGSDGPVHRYKIKLMVARAARAPGLLDEDRIVILEQAQELASTGIARFPNNKSILS EEECCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCEEEHHHHHHHHHCCHHCCCCCHHHHH AYAELGLEYLRRTGSYSFFDASMDELKAAEGRLGDPDITAMISRFERRAAGSEAEL HHHHHHHHHHHHCCCCCEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA