| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081136
Identifier: 99081136
GI number: 99081136
Start: 1388396
End: 1388932
Strand: Reverse
Name: 99081136
Synonym: TM1040_1295
Alternate gene names: NA
Gene position: 1388932-1388396 (Counterclockwise)
Preceding gene: 99081137
Following gene: 99081135
Centisome position: 43.39
GC content: 57.54
Gene sequence:
>537_bases ATGTCCAGAAACGTTGATCTGATCGCGATGCACGACGCAATACTCGCCCAGATCAGGGCCGACTTTCCTGACCTCGCCAC TGTCGGTGACTATGACCTCGATAAAAAGGCCCTGCCGGTGCCTGCGGTACTGGTCGAACTGATCGACCTAGAAGGCGATC CGGATGCAGACCCCGGCACCGAACAGGTGCCTTTCGTTTCAAAATGGGTCGCCCGCGTTATCCTCGGCTTTCGCACAGAG GGCGTCAAACGTGAGGTTCGCCAATTGACGGCCGCGCTCGCCGCCAAAGTTCATCGCCAGAGATGGGGGCAAAGGGTTGG TCCGGCACAGGTGACGTATATCGGGCCTGATGCTTTCGACCCTGAATTTGACAAGTTCGAGGTCTGGTCCGTCGAATGGG ATCAACAGATCGATCTGGGCGAAAGCGTGTGGACCGGCGAGGGCGTCGTTCCAGAGGTGGTAAATGTAGGCTGGGCACCA GATATCGGGCCAGGCAATGAGGATGAATATTCCGAAACCGTGGAGGCACCGCTATGA
Upstream 100 bases:
>100_bases CCTTTATCGAGGACGAAGTTTTTGACGAGATCGAAGAGGTATTCTTTCACTATTTTCGGGCCGAGGTGCGCGCCCGTACG ATCTATGGAGTGGGTAGCTG
Downstream 100 bases:
>100_bases GCTATGGCGCGGCAAGAAACGAACAAGTGCGCGAGGGGATCGTGCGGTTTGGTGTGATTACCGCCGTTGACCCGGGCGCC GCTCGCGCGAAGGTTAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MSRNVDLIAMHDAILAQIRADFPDLATVGDYDLDKKALPVPAVLVELIDLEGDPDADPGTEQVPFVSKWVARVILGFRTE GVKREVRQLTAALAAKVHRQRWGQRVGPAQVTYIGPDAFDPEFDKFEVWSVEWDQQIDLGESVWTGEGVVPEVVNVGWAP DIGPGNEDEYSETVEAPL
Sequences:
>Translated_178_residues MSRNVDLIAMHDAILAQIRADFPDLATVGDYDLDKKALPVPAVLVELIDLEGDPDADPGTEQVPFVSKWVARVILGFRTE GVKREVRQLTAALAAKVHRQRWGQRVGPAQVTYIGPDAFDPEFDKFEVWSVEWDQQIDLGESVWTGEGVVPEVVNVGWAP DIGPGNEDEYSETVEAPL >Mature_177_residues SRNVDLIAMHDAILAQIRADFPDLATVGDYDLDKKALPVPAVLVELIDLEGDPDADPGTEQVPFVSKWVARVILGFRTEG VKREVRQLTAALAAKVHRQRWGQRVGPAQVTYIGPDAFDPEFDKFEVWSVEWDQQIDLGESVWTGEGVVPEVVNVGWAPD IGPGNEDEYSETVEAPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19664; Mature: 19533
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNVDLIAMHDAILAQIRADFPDLATVGDYDLDKKALPVPAVLVELIDLEGDPDADPGT CCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC EQVPFVSKWVARVILGFRTEGVKREVRQLTAALAAKVHRQRWGQRVGPAQVTYIGPDAFD CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC PEFDKFEVWSVEWDQQIDLGESVWTGEGVVPEVVNVGWAPDIGPGNEDEYSETVEAPL CCCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure SRNVDLIAMHDAILAQIRADFPDLATVGDYDLDKKALPVPAVLVELIDLEGDPDADPGT CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC EQVPFVSKWVARVILGFRTEGVKREVRQLTAALAAKVHRQRWGQRVGPAQVTYIGPDAFD CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC PEFDKFEVWSVEWDQQIDLGESVWTGEGVVPEVVNVGWAPDIGPGNEDEYSETVEAPL CCCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA