Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081135

Identifier: 99081135

GI number: 99081135

Start: 1388022

End: 1388399

Strand: Reverse

Name: 99081135

Synonym: TM1040_1294

Alternate gene names: NA

Gene position: 1388399-1388022 (Counterclockwise)

Preceding gene: 99081136

Following gene: 99081134

Centisome position: 43.37

GC content: 60.32

Gene sequence:

>378_bases
ATGAGCTATGGCGCGGCAAGAAACGAACAAGTGCGCGAGGGGATCGTGCGGTTTGGTGTGATTACCGCCGTTGACCCGGG
CGCCGCTCGCGCGAAGGTTAGTTTCGGCGGCGAGAGCGAAAGCGCTTGGCTGTCATGGTTTCCGCTTCGCGCCGGGGCAA
TCAGCGTCTGGGCTCCACCGTCGGAGGGCGAGCAGGTCATGGTCTTGTCGGAATCTGGTGACACCGCGCAAGGCGTAATC
ATCGGCTCGGCCTTCAGCAGTTCTAACCCTCCAACAGCCGGAGCGGGTGGGTTGTTCAAGATCCAAGTCGGCGATTCCTC
GATTGAGATCGATGAAAACGGGATCCGGATTAGCGCACCCAGGATCGACCTGAACTGA

Upstream 100 bases:

>100_bases
CCGGCGAGGGCGTCGTTCCAGAGGTGGTAAATGTAGGCTGGGCACCAGATATCGGGCCAGGCAATGAGGATGAATATTCC
GAAACCGTGGAGGCACCGCT

Downstream 100 bases:

>100_bases
TGCCGGCTGTTACCAGAAAAGGCGACACCTGCACGGGCCACGGCAACTATCCTTCCCGCTCGAGCACTGGCGGTAGCGGT
TCCGTCTATACAAACGGCAA

Product: phage baseplate assembly protein V

Products: NA

Alternate protein names: Phage-Related Baseplate Assembly Protein V; Phage-Related Baseplate Protein; Phage P2 Baseplate Assembly GpV-Like Protein; Phage P2 Baseplate Assembly Protein GPV-Like Protein; Phage Baseplate Assembly Protein; Baseplate Assembly Protein V

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSYGAARNEQVREGIVRFGVITAVDPGAARAKVSFGGESESAWLSWFPLRAGAISVWAPPSEGEQVMVLSESGDTAQGVI
IGSAFSSSNPPTAGAGGLFKIQVGDSSIEIDENGIRISAPRIDLN

Sequences:

>Translated_125_residues
MSYGAARNEQVREGIVRFGVITAVDPGAARAKVSFGGESESAWLSWFPLRAGAISVWAPPSEGEQVMVLSESGDTAQGVI
IGSAFSSSNPPTAGAGGLFKIQVGDSSIEIDENGIRISAPRIDLN
>Mature_124_residues
SYGAARNEQVREGIVRFGVITAVDPGAARAKVSFGGESESAWLSWFPLRAGAISVWAPPSEGEQVMVLSESGDTAQGVII
GSAFSSSNPPTAGAGGLFKIQVGDSSIEIDENGIRISAPRIDLN

Specific function: Unknown

COG id: COG4540

COG function: function code R; Phage P2 baseplate assembly protein gpV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12952; Mature: 12820

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYGAARNEQVREGIVRFGVITAVDPGAARAKVSFGGESESAWLSWFPLRAGAISVWAPP
CCCCCCCCHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCC
SEGEQVMVLSESGDTAQGVIIGSAFSSSNPPTAGAGGLFKIQVGDSSIEIDENGIRISAP
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEECC
RIDLN
EEECC
>Mature Secondary Structure 
SYGAARNEQVREGIVRFGVITAVDPGAARAKVSFGGESESAWLSWFPLRAGAISVWAPP
CCCCCCCHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCC
SEGEQVMVLSESGDTAQGVIIGSAFSSSNPPTAGAGGLFKIQVGDSSIEIDENGIRISAP
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEECC
RIDLN
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA