| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081132
Identifier: 99081132
GI number: 99081132
Start: 1386446
End: 1387345
Strand: Reverse
Name: 99081132
Synonym: TM1040_1291
Alternate gene names: NA
Gene position: 1387345-1386446 (Counterclockwise)
Preceding gene: 99081133
Following gene: 99081131
Centisome position: 43.34
GC content: 58.0
Gene sequence:
>900_bases ATGGCTGGCGGCTTTGCATCAATCAATCTGTCTCAGTTGCCTGCGCCCGATGTGTTGCAGGCTATCGACTACGAAGTCGC GCTCGCAGAAATGCTATCTGAGCTCAGGCAGAGAGATCCGGCTTTTGACGCTCTGGTCGAAAGTGACCCTGCCTACAAAA TCCTCGAGATCGCGGCGTTTTATCGAACCTTGACTATTCAGCAGGGGAACGACGCAGCGCGAGCAGTGATGCCTGCCTAT GCGACGGGTTCTGATCTTGACCATATTGCCGCCCGCTATGCTGTTGAACGATTGGTGATCGATCCCGGTGATCCTGAGGC TCTCCCGCCAGTTCCCCCTGTCCTTGAGACCGACGACGCATTGCGCCGCCGAATGTTCCTCGCATTTGAAGGGCTGAGCA CTGCGGGGCCGATGGGTGCCTATGTGTTCCATGCACTTGGCGCGGATCCGGACGTCGGGGATGCCAGCGTGCAAAGCCCC GCGCCGGGCGAGGTGCTGGTCACGGTTCTTTCCCGGTCGGGCGATGGTGCTGCGCCTGCAACTCTGCTGACTGCTGTTGA TGCTGCCTTGAACAAGGATGATGTGCGCCCGCTTACGGATCTCGTGACTGTCCAAGGGGCCGCAATCATCGGATATACCA TCGAGGCGGTTCTTACTGTCTTACCCGGACCCGATAGTGCGGTTGTGCGAGACGCGGCTCAACGCGCAGCACTAGAGTAT GCAAGCCAGCAGCACCGTATCGGGGCAGATATTACCCTTTCGGGGCTTTATGCTGCACTTCATCAGCCAGGAGTGCAGAA CGTCGCGCTGATCAGTCCTGCAGCAGATATTCTGGTAGATGCAAGCGAGGCGGCATTCTGCTCTGCTGTTTCAGTTAGCA TTGGGGGCACCAATGCCTGA
Upstream 100 bases:
>100_bases CGCTCGAGGGTTCCGAACCTGGCGCAATCGTAATCGCTTTGGCGGGCCAGTATCTTCCAACAGGTGAGCCTGTGTTTCTC GAAGGAATAGGGCTCAACTG
Downstream 100 bases:
>100_bases AAGCCTTCTGCCGCATAACGCAACGACGCAGGAACGCGCTTTGGAAGCAGTTAGCGGGCCGCCTCTCTTCACGACAGCGC CGCTCCGCGAAATCTGGGAT
Product: baseplate J-like protein
Products: NA
Alternate protein names: Baseplate Assembly Protein J; Baseplate J-Like Protein; Phage Baseplate Assembly Protein; Phage-Related Baseplate Assembly Protein; Bacteriophage Baseplate Assembly Protein; Bacteriophage Tail Fiber Protein; Phage Baseplate Assembly Protein J; Pyocin R2_PP Baseplate/Tail Fiber Protein; Phage Protein Gp; Bacteriophage Baseplate Assembly Protein J; Phage Baseplate Protein; Phage Baseplate J-Like Protein; Prophage LambdaW5 Baseplate Assembly Protein J; Baseplate Assembly-Like Protein; Phage Baseplate Assembly; Prophage; GPJ Of Phage P2-Like; Phage P2 Baseplate Assembly Protein; Phage Tail-Like Protein; Bacteriophage Protein; Phage P2 Baseplate Assembly GpJ-Like Protein; Prophage Baseplate Assembly Protein; Bacteriophage P2 Baseplate Assembly Protein GPJ; Baseplate Assembly Protein GpJ; Baseplate Assembly Protein J Prophage; Baseplate Assembly Protein; Bacteriophage Baseplate Protein; Prophage LambdaW1 Baseplate Assembly Protein J; Phage Tail Protein; Phage Baseplate-Like Protein
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MAGGFASINLSQLPAPDVLQAIDYEVALAEMLSELRQRDPAFDALVESDPAYKILEIAAFYRTLTIQQGNDAARAVMPAY ATGSDLDHIAARYAVERLVIDPGDPEALPPVPPVLETDDALRRRMFLAFEGLSTAGPMGAYVFHALGADPDVGDASVQSP APGEVLVTVLSRSGDGAAPATLLTAVDAALNKDDVRPLTDLVTVQGAAIIGYTIEAVLTVLPGPDSAVVRDAAQRAALEY ASQQHRIGADITLSGLYAALHQPGVQNVALISPAADILVDASEAAFCSAVSVSIGGTNA
Sequences:
>Translated_299_residues MAGGFASINLSQLPAPDVLQAIDYEVALAEMLSELRQRDPAFDALVESDPAYKILEIAAFYRTLTIQQGNDAARAVMPAY ATGSDLDHIAARYAVERLVIDPGDPEALPPVPPVLETDDALRRRMFLAFEGLSTAGPMGAYVFHALGADPDVGDASVQSP APGEVLVTVLSRSGDGAAPATLLTAVDAALNKDDVRPLTDLVTVQGAAIIGYTIEAVLTVLPGPDSAVVRDAAQRAALEY ASQQHRIGADITLSGLYAALHQPGVQNVALISPAADILVDASEAAFCSAVSVSIGGTNA >Mature_298_residues AGGFASINLSQLPAPDVLQAIDYEVALAEMLSELRQRDPAFDALVESDPAYKILEIAAFYRTLTIQQGNDAARAVMPAYA TGSDLDHIAARYAVERLVIDPGDPEALPPVPPVLETDDALRRRMFLAFEGLSTAGPMGAYVFHALGADPDVGDASVQSPA PGEVLVTVLSRSGDGAAPATLLTAVDAALNKDDVRPLTDLVTVQGAAIIGYTIEAVLTVLPGPDSAVVRDAAQRAALEYA SQQHRIGADITLSGLYAALHQPGVQNVALISPAADILVDASEAAFCSAVSVSIGGTNA
Specific function: Unknown
COG id: COG3948
COG function: function code R; Phage-related baseplate assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30985; Mature: 30854
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGGFASINLSQLPAPDVLQAIDYEVALAEMLSELRQRDPAFDALVESDPAYKILEIAAF CCCCCEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH YRTLTIQQGNDAARAVMPAYATGSDLDHIAARYAVERLVIDPGDPEALPPVPPVLETDDA HHHEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHH LRRRMFLAFEGLSTAGPMGAYVFHALGADPDVGDASVQSPAPGEVLVTVLSRSGDGAAPA HHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCHH TLLTAVDAALNKDDVRPLTDLVTVQGAAIIGYTIEAVLTVLPGPDSAVVRDAAQRAALEY HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ASQQHRIGADITLSGLYAALHQPGVQNVALISPAADILVDASEAAFCSAVSVSIGGTNA HHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCHHHHEEECCHHHHHEEEEEECCCCCC >Mature Secondary Structure AGGFASINLSQLPAPDVLQAIDYEVALAEMLSELRQRDPAFDALVESDPAYKILEIAAF CCCCEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH YRTLTIQQGNDAARAVMPAYATGSDLDHIAARYAVERLVIDPGDPEALPPVPPVLETDDA HHHEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHH LRRRMFLAFEGLSTAGPMGAYVFHALGADPDVGDASVQSPAPGEVLVTVLSRSGDGAAPA HHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCHH TLLTAVDAALNKDDVRPLTDLVTVQGAAIIGYTIEAVLTVLPGPDSAVVRDAAQRAALEY HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ASQQHRIGADITLSGLYAALHQPGVQNVALISPAADILVDASEAAFCSAVSVSIGGTNA HHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCHHHHEEECCHHHHHEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA