Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081128

Identifier: 99081128

GI number: 99081128

Start: 1383852

End: 1384859

Strand: Reverse

Name: 99081128

Synonym: TM1040_1287

Alternate gene names: NA

Gene position: 1384859-1383852 (Counterclockwise)

Preceding gene: 99081129

Following gene: 99081127

Centisome position: 43.26

GC content: 62.9

Gene sequence:

>1008_bases
ATGGCGCGTTTTGCATCAGGTTCGGAACAAGCTAGCGCAGCAGCAGTGGGGATCGGAACCAATACAATTTCGGGCCAGAA
AATCCTACCGGCAGGCTACATGGGCGAGTTCGGCTCGGGCATGTGGAGTTGTTTCCAACAGCCCGGGACACACATCTTCA
TCGTTCCCGCAGGTGTCACAAGTCTACGTGTGCGTGTTGTTGGCCCCGGCGGCGGCGGGCGCGGCAATGACGGCTACGGC
GGAGCCGGAGGTGGTTATGCACATGGCGTTTTTGACGTCACACCGGGCGACAGCTTCGACGTAACGGTGGGGCAAGGCGG
CGACGGTGGCGATTTCCCAACTTCGGGCGGCACGTCGTCTTTTGGCGCTTTGATTTCGGCCACGGGCGGCACTGCATCCG
ACGACAGCAACACGCCCACGGTCGGAGGCCAAGGCTTTGGTGGCGACTTTCAGGCATCGGGCGGGGTGTCGGGGCAAGCC
CAGAGAACTGGGGGCGGGGGCGCTGGATCACAGCTTGGAAATGGCGGCAATAGCGCCGCGTTTGTCCAATCGGGCGGGGC
AGGCGTGAACAACGGTCACAGCTTCGCTTATGGTGGCGGTGGGCCATTTGGCCTAGCAGACTTGCACCACCACGGCTGGC
ATGAGAGCGACAATTTCGGTGCGCCCGACATTCTTGGCCATCAGGCCGGAATAGAGCGCGCAAGCTCATCCGAGAACCCC
TACACGTCCTTCAACCCGATAAACGCTGTTCTACGATTTCCGTTTGATGGGTTCGTTGGCGGCGGTGGAGAGGGCACTGA
GTATCAAGGCGCTCCGGGAGGGATTGGCGGCGGCGGTGGCGGTGGTTGGAATACAACATCACACCACGGTGGTCGCGGCG
GTATTGGTGGCGGTGCGGGCGGCGGGTTCTCCGGAGGTCGCAACCACGGCGGCATTGGCGGCGGTGGCGGCGGCGCCCGC
GGTGATGGCGGCAAAGGCGGACATGGCCTCGTGATTGTGGAGTGGTAA

Upstream 100 bases:

>100_bases
TCCGCACCAATGAACCGATGGCGGCGGGTGAGGTGATCTATGTCCAAGCTTCCACCGACACAGTGGATGTGAGGGTTTCA
GGTTATGAGGAGGACGTCTG

Downstream 100 bases:

>100_bases
AATGAAAGCGCGCATTCAAAACGACGTTGCAGTCGATGTGCATCCTGCACCCGAGACAGCATTTCACCCCAGCATTGCTG
CGCAGTTCGAAGCGGTGCCG

Product: putative secreted serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MARFASGSEQASAAAVGIGTNTISGQKILPAGYMGEFGSGMWSCFQQPGTHIFIVPAGVTSLRVRVVGPGGGGRGNDGYG
GAGGGYAHGVFDVTPGDSFDVTVGQGGDGGDFPTSGGTSSFGALISATGGTASDDSNTPTVGGQGFGGDFQASGGVSGQA
QRTGGGGAGSQLGNGGNSAAFVQSGGAGVNNGHSFAYGGGGPFGLADLHHHGWHESDNFGAPDILGHQAGIERASSSENP
YTSFNPINAVLRFPFDGFVGGGGEGTEYQGAPGGIGGGGGGGWNTTSHHGGRGGIGGGAGGGFSGGRNHGGIGGGGGGAR
GDGGKGGHGLVIVEW

Sequences:

>Translated_335_residues
MARFASGSEQASAAAVGIGTNTISGQKILPAGYMGEFGSGMWSCFQQPGTHIFIVPAGVTSLRVRVVGPGGGGRGNDGYG
GAGGGYAHGVFDVTPGDSFDVTVGQGGDGGDFPTSGGTSSFGALISATGGTASDDSNTPTVGGQGFGGDFQASGGVSGQA
QRTGGGGAGSQLGNGGNSAAFVQSGGAGVNNGHSFAYGGGGPFGLADLHHHGWHESDNFGAPDILGHQAGIERASSSENP
YTSFNPINAVLRFPFDGFVGGGGEGTEYQGAPGGIGGGGGGGWNTTSHHGGRGGIGGGAGGGFSGGRNHGGIGGGGGGAR
GDGGKGGHGLVIVEW
>Mature_334_residues
ARFASGSEQASAAAVGIGTNTISGQKILPAGYMGEFGSGMWSCFQQPGTHIFIVPAGVTSLRVRVVGPGGGGRGNDGYGG
AGGGYAHGVFDVTPGDSFDVTVGQGGDGGDFPTSGGTSSFGALISATGGTASDDSNTPTVGGQGFGGDFQASGGVSGQAQ
RTGGGGAGSQLGNGGNSAAFVQSGGAGVNNGHSFAYGGGGPFGLADLHHHGWHESDNFGAPDILGHQAGIERASSSENPY
TSFNPINAVLRFPFDGFVGGGGEGTEYQGAPGGIGGGGGGGWNTTSHHGGRGGIGGGAGGGFSGGRNHGGIGGGGGGARG
DGGKGGHGLVIVEW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31879; Mature: 31748

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFASGSEQASAAAVGIGTNTISGQKILPAGYMGEFGSGMWSCFQQPGTHIFIVPAGVT
CCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
SLRVRVVGPGGGGRGNDGYGGAGGGYAHGVFDVTPGDSFDVTVGQGGDGGDFPTSGGTSS
EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCC
FGALISATGGTASDDSNTPTVGGQGFGGDFQASGGVSGQAQRTGGGGAGSQLGNGGNSAA
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
FVQSGGAGVNNGHSFAYGGGGPFGLADLHHHGWHESDNFGAPDILGHQAGIERASSSENP
EEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHCCHHHHHHCCCCCCC
YTSFNPINAVLRFPFDGFVGGGGEGTEYQGAPGGIGGGGGGGWNTTSHHGGRGGIGGGAG
CCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGFSGGRNHGGIGGGGGGARGDGGKGGHGLVIVEW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure 
ARFASGSEQASAAAVGIGTNTISGQKILPAGYMGEFGSGMWSCFQQPGTHIFIVPAGVT
CCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
SLRVRVVGPGGGGRGNDGYGGAGGGYAHGVFDVTPGDSFDVTVGQGGDGGDFPTSGGTSS
EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCC
FGALISATGGTASDDSNTPTVGGQGFGGDFQASGGVSGQAQRTGGGGAGSQLGNGGNSAA
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
FVQSGGAGVNNGHSFAYGGGGPFGLADLHHHGWHESDNFGAPDILGHQAGIERASSSENP
EEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHCCHHHHHHCCCCCCC
YTSFNPINAVLRFPFDGFVGGGGEGTEYQGAPGGIGGGGGGGWNTTSHHGGRGGIGGGAG
CCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGFSGGRNHGGIGGGGGGARGDGGKGGHGLVIVEW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA