| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081121
Identifier: 99081121
GI number: 99081121
Start: 1377836
End: 1378246
Strand: Reverse
Name: 99081121
Synonym: TM1040_1280
Alternate gene names: NA
Gene position: 1378246-1377836 (Counterclockwise)
Preceding gene: 99081122
Following gene: 99081120
Centisome position: 43.06
GC content: 56.93
Gene sequence:
>411_bases ATGGCCGGAACGATGATGCAACTCGGCGCCTACCAGTTCAGTATCGACAACGCTGCCTATCAAAACCTTGAGAGGTCGAC CGAATACCGCTGGGCTGCGCAGGAGCGTGTCGGCGCAGATGACGCATTGCAATTCACGGGATATGGCGAGGACACGATTT CGTTGCGCGGAGTAATTTATCCACACTTCAAGGGCGGGCTGGCGCAACTAGACAAGATGCGCCGTCAGGCCGCCATCGGC ATTCCGTTGCCGCTCATTGCTGGTACAGGGCGCATTCTGGGCGTTTGGGTGGTCAAAAGTGTGCGAGAGGGCCAACGGAC CTTTACGCACCATGGCGCGCCACTGTGGCAAGAATTTGGGATCAGTATTCGGAGGTACGACGGTGGACTCCGCAGTCTTC TACCATTCTAA
Upstream 100 bases:
>100_bases CGCAGAGTCTCATCGACGAGCTCGAGCGCCGCGGGCGCGAAGCGCAGGCAGGGGCGCTCTATGACCAGGCTCACAATTAT GGGCAATACGGGGGCGCATG
Downstream 100 bases:
>100_bases GGAAGGTGAGGCCCTCGATGAGATTGTCTGGCGCCACTACCGCGCAGAGATCCGGGGCGCGTTCGAAACGGTGCTCGAAG CAAATCCGGGTATCGCTGCA
Product: phage P2 GpU
Products: NA
Alternate protein names: Phage Tail Protein; Phage P2 GpU; Phage P2 GpU Family Protein; Phage Protein U; Phage-Related Tail Protein; Phage Tail Protein U; Tail Fiber Protein; Phage-Related Protein; Pyocin R2_PP Tail Formation Protein; Phage Tail Assembly Protein; Bacteriophage Tail Fiber Protein U; Phage P2 GpU Protein; Prophage Tail Protein; Phage-Like Tail Protein; Bacteriophage P2 Phage-Related Tail U Protein; Tail Assembly Protein; Bacteriophage Tail Protein; Fels-2 Prophage Protein; Pyocin R2_PP Tail Formation Protein GpU; Phage P2 GpU Superfamily; Bacteriophage P2 Tail Protein GPU; Phage Tail; Tail Protein; Tail Protein U
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQLDKMRRQAAIG IPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF
Sequences:
>Translated_136_residues MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQLDKMRRQAAIG IPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF >Mature_135_residues AGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQLDKMRRQAAIGI PLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF
Specific function: Unknown
COG id: COG3499
COG function: function code R; Phage protein U
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15175; Mature: 15043
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIY CCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEE PHFKGGLAQLDKMRRQAAIGIPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFG CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC ISIRRYDGGLRSLLPF CEEEECCCCHHHHCCC >Mature Secondary Structure AGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIY CCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEE PHFKGGLAQLDKMRRQAAIGIPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFG CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC ISIRRYDGGLRSLLPF CEEEECCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA