Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081121

Identifier: 99081121

GI number: 99081121

Start: 1377836

End: 1378246

Strand: Reverse

Name: 99081121

Synonym: TM1040_1280

Alternate gene names: NA

Gene position: 1378246-1377836 (Counterclockwise)

Preceding gene: 99081122

Following gene: 99081120

Centisome position: 43.06

GC content: 56.93

Gene sequence:

>411_bases
ATGGCCGGAACGATGATGCAACTCGGCGCCTACCAGTTCAGTATCGACAACGCTGCCTATCAAAACCTTGAGAGGTCGAC
CGAATACCGCTGGGCTGCGCAGGAGCGTGTCGGCGCAGATGACGCATTGCAATTCACGGGATATGGCGAGGACACGATTT
CGTTGCGCGGAGTAATTTATCCACACTTCAAGGGCGGGCTGGCGCAACTAGACAAGATGCGCCGTCAGGCCGCCATCGGC
ATTCCGTTGCCGCTCATTGCTGGTACAGGGCGCATTCTGGGCGTTTGGGTGGTCAAAAGTGTGCGAGAGGGCCAACGGAC
CTTTACGCACCATGGCGCGCCACTGTGGCAAGAATTTGGGATCAGTATTCGGAGGTACGACGGTGGACTCCGCAGTCTTC
TACCATTCTAA

Upstream 100 bases:

>100_bases
CGCAGAGTCTCATCGACGAGCTCGAGCGCCGCGGGCGCGAAGCGCAGGCAGGGGCGCTCTATGACCAGGCTCACAATTAT
GGGCAATACGGGGGCGCATG

Downstream 100 bases:

>100_bases
GGAAGGTGAGGCCCTCGATGAGATTGTCTGGCGCCACTACCGCGCAGAGATCCGGGGCGCGTTCGAAACGGTGCTCGAAG
CAAATCCGGGTATCGCTGCA

Product: phage P2 GpU

Products: NA

Alternate protein names: Phage Tail Protein; Phage P2 GpU; Phage P2 GpU Family Protein; Phage Protein U; Phage-Related Tail Protein; Phage Tail Protein U; Tail Fiber Protein; Phage-Related Protein; Pyocin R2_PP Tail Formation Protein; Phage Tail Assembly Protein; Bacteriophage Tail Fiber Protein U; Phage P2 GpU Protein; Prophage Tail Protein; Phage-Like Tail Protein; Bacteriophage P2 Phage-Related Tail U Protein; Tail Assembly Protein; Bacteriophage Tail Protein; Fels-2 Prophage Protein; Pyocin R2_PP Tail Formation Protein GpU; Phage P2 GpU Superfamily; Bacteriophage P2 Tail Protein GPU; Phage Tail; Tail Protein; Tail Protein U

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQLDKMRRQAAIG
IPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF

Sequences:

>Translated_136_residues
MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQLDKMRRQAAIG
IPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF
>Mature_135_residues
AGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQLDKMRRQAAIGI
PLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF

Specific function: Unknown

COG id: COG3499

COG function: function code R; Phage protein U

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15175; Mature: 15043

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIY
CCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEE
PHFKGGLAQLDKMRRQAAIGIPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFG
CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
ISIRRYDGGLRSLLPF
CEEEECCCCHHHHCCC
>Mature Secondary Structure 
AGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIY
CCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEE
PHFKGGLAQLDKMRRQAAIGIPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFG
CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
ISIRRYDGGLRSLLPF
CEEEECCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA