Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081122

Identifier: 99081122

GI number: 99081122

Start: 1378246

End: 1380720

Strand: Reverse

Name: 99081122

Synonym: TM1040_1281

Alternate gene names: NA

Gene position: 1380720-1378246 (Counterclockwise)

Preceding gene: 99081123

Following gene: 99081121

Centisome position: 43.13

GC content: 61.09

Gene sequence:

>2475_bases
ATGGCAAAAAATCAGCGCCTTAACGCCACTGTGACCATCGGCGGTGTTGTTGAAAATTCCTTCCGCAAGGGTATCGGTTT
TGTCCGGTCGGGCTTTGACAAGGTCGGGCAAAGCATCCGCGATGTTAAAGAACGCCAGAAAGAGCTTTCGCGCACGCGCA
AAGACCTTGAGAAACAGGGCAAATCGGTCGAGCACCTGGACCGCGAGTATGAAGCATTAGAGCGCACGCTCGAGGATCTG
GCGCGCAAACAGAGGCGCTGGGAGCGCGCGATGCGCGACAGCGCCCGGGTCGGCAAAACCTTTGGCGATATGACCCAACG
GATCGGACGGCTCGCAAGGCAATCGGCAATTGGAATTACAGCGGTTGGCGCCGGGATCTTCGCGCTGACCAGTTCAACGG
CTTCATACGGTGACCAGGTTGCCAAAACGGCAGGGAAGCTCGGGATCGGGATCGAGGCGTTACAGGAATACCGCTATGCG
GCCGAGCGCTCTGGGGTGTCGACAGAGACGTTCGATAGCTCACTGACAGCAATGCAGAAGCGCCTGGGCGAGGCAGCGCA
AGGCACGGGTGCCGCGAAAAAAGCGCTCGACCAGATCGGCCTGAGTGCAAGCGACCTGATAGCCATGGGGCCAGAGCGCG
CCATGGGTGCAATCGCGGACAAACTGCAGGGTATCGAAGCGCCAGCCGAACGCGCGGCGATTGCTGCGGCATTGTTCAGC
CGGTCGGGGATCGGCATGGTAAACATGCTCGGAAACGGATCGGATGCGCTGGAACAACTGCGCGAAGACGCCCGGCGCAC
CGGCTATGTCTTGAGCGAGGAAGCTGCGCGGGACGCAGAAGCTTTTGCCGACGCACAGCTAGATGCGCAACTGTCGATCA
AAGGCCTGAAAAACACCATCGGGTCAGAGCTGATGCCTGTGGTCACCCGGTCGATGCAGCGGTTTAGCGAATGGGCCGTG
ACCAATCGCGACGACGTTGCAGCCTTTGCTGATACCGCCGCAACCAAGCTTGAGGCAGCTTTGCCTGTGATCGGTCAAAT
CGCCGAGGGCATGGGTGATGTGTCTAAGGCAGTCGGTGGCGTGATCTCCAAAACGGCGGAAATGGTCGGGGGCTGGAAGA
ATTTCGGAATCGTCGTCGGCACGGTCTTGGCCGGTCGCACCATCGCCAGCGTGCTCAATTTCGGCTGGGCGGTCGGTCGC
CTCGGCGTCTCTATGGCGGCGCTTGTGCCGTGGGGGGCCGCAGGAGCTGGCGCGATGAAGTTGTTCGCTGGTGGGCTTGC
CCTGGTCAAGACGGGCGTTCTTGCTGTCGGGCGGGCTTTGCTGATGAACCCCATTGGGCTTGCCGTGGCCGGGATCGCGG
GATCTGCTTACCTGATCTATGAAAACTGGGAGAAGGTCGGGCCGTGGTTCGCCGAACTATGGGATGGCGTGAAGGGTCAT
TTCGGCGGGCTTGGTCGATTTGTCTCTGGTGTCTGGCGGGGTGACATGGATGCCGCCGCTGCAGGCCTGTCCGACGCTTG
GGGATCAGCAAAGGCGGTCTTCTCGACAGTGTTCGACGGGATCACTGGAGTTTTTCGTTTTGCATGGGAGAACGGGATAA
AGCCGATCACCGACAAGCTGGGGATTACAAGCCACATCACAGCAGCGTGGGACATCGCCCGCACGATGATCGGGACCGCT
ATTGGCGAAATCGGCGTCGTGCTCGAAACTGCGTATGACGGCAGTATCGGACCTGTGATCGAGGCACTGGGCGCAACCGG
CGGGATCTCCGCCGCGTGGGAAGAGGTCAAAACCGCTGTCGGCGCTGTGATCGAATGGCTGGCGCAAAAGTTCGTTTGGC
TGATGGAAAAGCTGCAACCCGTCCTCGATGGCCTGTCATGGCTCCGGGACAAGGGTGCGGGAGCCGTCGCGGGCATCCAG
GGAATCGGCGACAGCATCAGTAACGGTGTCAGCAATCTGTTCGGCGGTGGCGATAGCAGTGGCGATGAAGGGCCGGCCAA
TCCGCGCAGCGGTCGCGCAAAGCCCATAAGGATTTCTGGTTCCTATTTAGGCGGCACCATCGGGCGTGGCTTCCGCGAGG
TTGGAGAACAAGGGCCTGAGACGATCTGGACCTCGAAGGGCGGCTATGTGGCACACGCAAACGCGACAGAGCGTCTGGCG
CGTCTGTCTGAGCGCGCTGGGCCTGTTCTGGATGCTTTGGGTGCTGGCCTGCAGAGGGCCATGGCGGGCGCGCAGCAAGC
CGTCGCGCCGGTGTTGCAGCGTATCGAGGTCACAGGCGATCAGATGCAGGGTCGGGTAGCTTCTCCGCAGACGCATGCTG
CTCAGGCCGCGCCGGTTGTGATCCATGCACAAATTCATGCTGGCAGTATGAGCCCGCAGAGTCTCATCGACGAGCTCGAG
CGCCGCGGGCGCGAAGCGCAGGCAGGGGCGCTCTATGACCAGGCTCACAATTATGGGCAATACGGGGGCGCATGA

Upstream 100 bases:

>100_bases
GTGCTGCTGATCGCACGCGAGACCGGCTGGTCGTGCGCCGAGATCTCCGCAATGAGCGTCAGTCGCATGACGTGGTGGCT
TGAAGGCCTGAGGGAAATCA

Downstream 100 bases:

>100_bases
TGGCCGGAACGATGATGCAACTCGGCGCCTACCAGTTCAGTATCGACAACGCTGCCTATCAAAACCTTGAGAGGTCGACC
GAATACCGCTGGGCTGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Phage Tail Tape Measure Protein; Phage-Related Tail Transmembrane Protein; Phage Related Protein; Phage Tail Fiber Protein; Bacteriophage Tail Protein; Methyl-Accepting Chemotaxis Protein; Bacteriophage Tail Protein/Phage Tail Tape Measure Protein

Number of amino acids: Translated: 824; Mature: 823

Protein sequence:

>824_residues
MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREYEALERTLEDL
ARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYA
AERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS
RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAV
TNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGR
LGVSMAALVPWGAAGAGAMKLFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH
FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTA
IGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQ
GIGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA
RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVVIHAQIHAGSMSPQSLIDELE
RRGREAQAGALYDQAHNYGQYGGA

Sequences:

>Translated_824_residues
MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREYEALERTLEDL
ARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYA
AERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS
RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAV
TNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGR
LGVSMAALVPWGAAGAGAMKLFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH
FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTA
IGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQ
GIGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA
RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVVIHAQIHAGSMSPQSLIDELE
RRGREAQAGALYDQAHNYGQYGGA
>Mature_823_residues
AKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREYEALERTLEDLA
RKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYAA
ERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFSR
SGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAVT
NRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRL
GVSMAALVPWGAAGAGAMKLFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGHF
GGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTAI
GEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQG
IGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLAR
LSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVVIHAQIHAGSMSPQSLIDELER
RGREAQAGALYDQAHNYGQYGGA

Specific function: Unknown

COG id: COG5283

COG function: function code S; Phage-related tail protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86346; Mature: 86215

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQG
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KSVEHLDREYEALERTLEDLARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYAAERSGVSTETFDSSLTAMQK
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS
HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTI
CCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GSELMPVVTRSMQRFSEWAVTNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGG
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRLGVSMAALVPWGAAGAGAMK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHHH
FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKL
HHHHHHHHHHHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
GITSHITAAWDIARTMIGTAIGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
GAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQGIGDSISNGVSNLFGGGDSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC
GDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA
CCCCCCCCCCCCCCEEEEECCHHCHHHHHHHHHHHCCCCCCEEECCCCEEEECCHHHHHH
RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCCCEE
IHAQIHAGSMSPQSLIDELERRGREAQAGALYDQAHNYGQYGGA
EEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQG
CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KSVEHLDREYEALERTLEDLARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYAAERSGVSTETFDSSLTAMQK
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS
HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTI
CCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GSELMPVVTRSMQRFSEWAVTNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGG
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRLGVSMAALVPWGAAGAGAMK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHHH
FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKL
HHHHHHHHHHHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
GITSHITAAWDIARTMIGTAIGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
GAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQGIGDSISNGVSNLFGGGDSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC
GDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA
CCCCCCCCCCCCCCEEEEECCHHCHHHHHHHHHHHCCCCCCEEECCCCEEEECCHHHHHH
RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCCCEE
IHAQIHAGSMSPQSLIDELERRGREAQAGALYDQAHNYGQYGGA
EEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA