| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is livG [H]
Identifier: 99081114
GI number: 99081114
Start: 1371995
End: 1372786
Strand: Direct
Name: livG [H]
Synonym: TM1040_1273
Alternate gene names: 99081114
Gene position: 1371995-1372786 (Clockwise)
Preceding gene: 99081113
Following gene: 99081115
Centisome position: 42.86
GC content: 57.58
Gene sequence:
>792_bases ATGATCGTCGTCGAGGATTTGCATAAGCACTTCGGCGGGTTCCACGCGGTTGACGGCGCCTCGCTCGAAATCGCAAAGGG CTCGATTACGGGTTTGATCGGACCAAACGGTGCCGGAAAGACCACGCTTTTCAACGTTGTGGCAGGGGTTCTTCCTCCGA CGTCAGGCCGCGTCCTGATGGATGGAGAGGATATTACCGCCCTGCCGCCACATGAATTGTTCCACAAAGGTCTGCTGCGC ACCTTCCAGATCGCGCATGAGTTCTCCTCGATGACCTGCCGCGAGAACCTGATGATGGTTCCGGGCAACCAATCGGGTGA GACGCTGTGGAACACCTGGTTTGGCCGCAAGCGCATCGCCGATGAAGAGCGCGCCCTGCGCGCCAAAGCAGATGAGGTGC TGGAGTTCCTCACCATCAGCCATATCGCCGATCTCAAGGCCGGCGAGATTTCTGGCGGCCAGAAGAAGCTCCTGGAGCTG GGGCGCACCATGATGGTCGATGCCAAGATCGTCTTCCTCGACGAGGTGGGCGCCGGTGTGAACCGTACCCTCCTTTATAC GATTGCCGATGCCATCAAACGCCTCAACGAGGAACGTGGCTATACCTTCGTGGTGATCGAACACGACATGGAGTTCATCG GCCGCCTGTGTGATCCGGTGATCGTCATGGCCGAGGGCAAGAAACTGGCCGAGGGTACCCTCGATGAGATCAAGGCGAAT GAGCAAGTCATCGAAGCTTATCTCGGCACGGGCCTGAAAAATAAAGATAAACTGCAAGGGGCTGACGCATGA
Upstream 100 bases:
>100_bases CCACTGTTGCACATCGCATCTGATCAGCCCGGGAGCCATTGCGCCCCGGGCTGTTCCAAATAAAAGGGCCGACAAAGAGA TCGGCAGGGGTAAACATGAC
Downstream 100 bases:
>100_bases GCGAACCCTTTTTGATTGGCGACAGCATGACGGGTGGCTATGGCAAGGGGCCGGACATCCTGCATGATTGCACCATCGCC GTGAACCCGGGCGAAATCGC
Product: ABC transporter related
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVVAGVLPPTSGRVLMDGEDITALPPHELFHKGLLR TFQIAHEFSSMTCRENLMMVPGNQSGETLWNTWFGRKRIADEERALRAKADEVLEFLTISHIADLKAGEISGGQKKLLEL GRTMMVDAKIVFLDEVGAGVNRTLLYTIADAIKRLNEERGYTFVVIEHDMEFIGRLCDPVIVMAEGKKLAEGTLDEIKAN EQVIEAYLGTGLKNKDKLQGADA
Sequences:
>Translated_263_residues MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVVAGVLPPTSGRVLMDGEDITALPPHELFHKGLLR TFQIAHEFSSMTCRENLMMVPGNQSGETLWNTWFGRKRIADEERALRAKADEVLEFLTISHIADLKAGEISGGQKKLLEL GRTMMVDAKIVFLDEVGAGVNRTLLYTIADAIKRLNEERGYTFVVIEHDMEFIGRLCDPVIVMAEGKKLAEGTLDEIKAN EQVIEAYLGTGLKNKDKLQGADA >Mature_263_residues MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVVAGVLPPTSGRVLMDGEDITALPPHELFHKGLLR TFQIAHEFSSMTCRENLMMVPGNQSGETLWNTWFGRKRIADEERALRAKADEVLEFLTISHIADLKAGEISGGQKKLLEL GRTMMVDAKIVFLDEVGAGVNRTLLYTIADAIKRLNEERGYTFVVIEHDMEFIGRLCDPVIVMAEGKKLAEGTLDEIKAN EQVIEAYLGTGLKNKDKLQGADA
Specific function: Probable component of a branched-chain amino-acid transport system [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=235, Percent_Identity=30.6382978723404, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI27477115, Length=240, Percent_Identity=27.9166666666667, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=25.9090909090909, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI156105685, Length=231, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI21536376, Length=223, Percent_Identity=27.8026905829596, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI171184400, Length=221, Percent_Identity=28.5067873303167, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI45446740, Length=252, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI47078218, Length=252, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI153792144, Length=179, Percent_Identity=26.8156424581006, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI116734710, Length=245, Percent_Identity=27.7551020408163, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=25.7777777777778, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI150417984, Length=244, Percent_Identity=28.2786885245902, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=27.3972602739726, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=27.3972602739726, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27881501, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI9955968, Length=231, Percent_Identity=23.8095238095238, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9955966, Length=231, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI45243524, Length=231, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI42741659, Length=233, Percent_Identity=26.1802575107296, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=25.6637168141593, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=33.3333333333333, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1789593, Length=252, Percent_Identity=30.5555555555556, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=29.6943231441048, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082268, Length=250, Percent_Identity=30.8, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI87081791, Length=237, Percent_Identity=27.8481012658228, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=26.0683760683761, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=28.6885245901639, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=26.8398268398268, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=29.6610169491525, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1790525, Length=250, Percent_Identity=27.2, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=26.6949152542373, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786345, Length=227, Percent_Identity=26.8722466960352, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87081782, Length=247, Percent_Identity=31.1740890688259, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1790190, Length=257, Percent_Identity=25.2918287937743, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786253, Length=231, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1788472, Length=242, Percent_Identity=28.099173553719, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1789032, Length=226, Percent_Identity=30.0884955752212, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1790467, Length=226, Percent_Identity=24.7787610619469, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789672, Length=244, Percent_Identity=26.2295081967213, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790544, Length=256, Percent_Identity=24.609375, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=27.3504273504274, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=25.6637168141593, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=25.3456221198157, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789962, Length=249, Percent_Identity=25.3012048192771, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=25.6410256410256, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787500, Length=229, Percent_Identity=23.5807860262009, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=29.004329004329, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=24.8945147679325, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI48994997, Length=240, Percent_Identity=26.25, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=25.609756097561, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787758, Length=251, Percent_Identity=24.3027888446215, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788225, Length=262, Percent_Identity=25.9541984732824, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788210, Length=248, Percent_Identity=23.7903225806452, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=25.9433962264151, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787792, Length=251, Percent_Identity=24.7011952191235, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789891, Length=225, Percent_Identity=25.3333333333333, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=24.6696035242291, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786872, Length=242, Percent_Identity=26.0330578512397, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=25.6302521008403, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787972, Length=249, Percent_Identity=25.3012048192771, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=248, Percent_Identity=22.5806451612903, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788897, Length=225, Percent_Identity=24.4444444444444, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=25.1046025104602, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788644, Length=266, Percent_Identity=24.812030075188, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=23.0088495575221, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1788165, Length=247, Percent_Identity=22.2672064777328, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787112, Length=227, Percent_Identity=25.5506607929515, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787041, Length=286, Percent_Identity=25.8741258741259, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=245, Percent_Identity=25.3061224489796, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789873, Length=234, Percent_Identity=23.9316239316239, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786981, Length=215, Percent_Identity=26.5116279069767, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17510237, Length=254, Percent_Identity=27.9527559055118, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI71983510, Length=252, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71983523, Length=252, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71983516, Length=252, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17565938, Length=233, Percent_Identity=27.4678111587983, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17543740, Length=244, Percent_Identity=27.0491803278689, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17565586, Length=213, Percent_Identity=30.9859154929577, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193208177, Length=233, Percent_Identity=26.1802575107296, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115534520, Length=237, Percent_Identity=27.0042194092827, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115533592, Length=234, Percent_Identity=25.2136752136752, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71992285, Length=237, Percent_Identity=24.4725738396624, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=28, Blast_Score=74, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=252, Percent_Identity=25, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI221512771, Length=240, Percent_Identity=29.5833333333333, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI28574150, Length=230, Percent_Identity=27.8260869565217, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI116007328, Length=230, Percent_Identity=27.8260869565217, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI116007184, Length=238, Percent_Identity=25.2100840336134, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221500365, Length=238, Percent_Identity=25.2100840336134, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28573571, Length=230, Percent_Identity=23.4782608695652, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28573573, Length=229, Percent_Identity=23.5807860262009, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24643674, Length=237, Percent_Identity=24.8945147679325, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28730; Mature: 28730
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVVAGVLPPTSGRVLM CEEEHHHHHHCCCEEECCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE DGEDITALPPHELFHKGLLRTFQIAHEFSSMTCRENLMMVPGNQSGETLWNTWFGRKRIA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHCHHHCC DEERALRAKADEVLEFLTISHIADLKAGEISGGQKKLLELGRTMMVDAKIVFLDEVGAGV CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEECCCCCC NRTLLYTIADAIKRLNEERGYTFVVIEHDMEFIGRLCDPVIVMAEGKKLAEGTLDEIKAN CHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCEEEEECCCHHHCCCHHHHHHH EQVIEAYLGTGLKNKDKLQGADA HHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVVAGVLPPTSGRVLM CEEEHHHHHHCCCEEECCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE DGEDITALPPHELFHKGLLRTFQIAHEFSSMTCRENLMMVPGNQSGETLWNTWFGRKRIA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHCHHHCC DEERALRAKADEVLEFLTISHIADLKAGEISGGQKKLLELGRTMMVDAKIVFLDEVGAGV CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEECCCCCC NRTLLYTIADAIKRLNEERGYTFVVIEHDMEFIGRLCDPVIVMAEGKKLAEGTLDEIKAN CHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCEEEEECCCHHHCCCHHHHHHH EQVIEAYLGTGLKNKDKLQGADA HHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 11470432 [H]