| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is pstS [H]
Identifier: 99081103
GI number: 99081103
Start: 1359739
End: 1360779
Strand: Reverse
Name: pstS [H]
Synonym: TM1040_1262
Alternate gene names: 99081103
Gene position: 1360779-1359739 (Counterclockwise)
Preceding gene: 99081104
Following gene: 99081102
Centisome position: 42.51
GC content: 58.6
Gene sequence:
>1041_bases ATGTCCTTTGTGAAACTGACCGCATCCACTCTCGCCATCGCAGCCGTATCGGCCACCGCAGCTTCTGCGCGTGAGCAGGT GCAGGTCGCAGGTTCTTCCACCGTTCTGCCCTATGCTTCGATCGTTGCCGAAGCCTTTGGCGAAAACTTCGACTTCCCGA CACCGGTTGTCGAATCCGGTGGATCCTCCGCCGGCCTCAAGCGTTTCTGCGAAGGCGTTGGCGAAAACACCATCGACATT GCAAACGCCTCCCGCGCGATCAAAGAAAAAGAGATCAAGGCCTGTGCCGAAGCCGGCGTGACCGACATCATCGAAGTCCG CATCGGTTATGATGGCATCGTGTTTGCCTCCGACATCGACGGCAACGGTTTTGAATTCACCCCGACCGATTGGTTCCTCG CGCTCTCCGACAAAGTTGTTGTTGACGGCGCGCTGGTCGACAACCCGAACAAGACCTGGGCCGATGTAAACGCCGCCTTC CCGGCACAGCCCATCCAGGCCTTCATCCCCGGCACCAAGCACGGCACCCGCGAAGTCTTTGAAGACAAAGTGATCCTCGC TGGCTGTGAAGAAACCGGCGCGTTCGATCTGCTGAAAGAAGCCAACGGTGGCGACAAGAAAGCAGCCGAAAAAGCCTGTA TCGCTCTGCGCACCGACGGCGTGTCCGTGGACATCGACGGCGACTACACCGAGACCCTCGCACGTATCGACTCCAACAAG GACGGTATCGGCGTGTTCGGTCTGGCCTTCTACGAGAACAACACCGACAAGCTGCAGGTTGCAACCATGTCCGGCGTTGT TCCCTCCACCGAATCCATCGCAACCGGCGAATATCCGGTGTCCCGCCCGCTGTACTTCTACGTGAAGAAAGCGCACATCG GCGTAATCCCCGGCCTCAAGGAATTCGCTGAGTTCTTCGTTGCAGATGAAGTTGCTGGCCCCGACGGCCCGCTGGCCGAA TACGGCCTCGTAGCAGACCCCGAGCTTGCAAAGACTCAGGAAGCTGTTGCAGCAGAAGCAACCATGGGCGGCAACTCCTA A
Upstream 100 bases:
>100_bases TGTTACATAGCTGTCACAAAAGCCACACCTGAGCCTTCTAGGAGGGGCGCAAGATCATCTTGGGGGTGATCGTAAACTTC TTAAACTCATGGAGACTTCA
Downstream 100 bases:
>100_bases TAGCCCCGCGCATGTAAAGTTCAGGCCGGGGCGGATATGACGTCCCGGCCTTTCGTTTCAAAAGTATCGCTGTTTTCCTC CCTTCTTGCACCGCCAAACG
Product: phosphate ABC transporter, periplasmic phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MSFVKLTASTLAIAAVSATAASAREQVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESGGSSAGLKRFCEGVGENTIDI ANASRAIKEKEIKACAEAGVTDIIEVRIGYDGIVFASDIDGNGFEFTPTDWFLALSDKVVVDGALVDNPNKTWADVNAAF PAQPIQAFIPGTKHGTREVFEDKVILAGCEETGAFDLLKEANGGDKKAAEKACIALRTDGVSVDIDGDYTETLARIDSNK DGIGVFGLAFYENNTDKLQVATMSGVVPSTESIATGEYPVSRPLYFYVKKAHIGVIPGLKEFAEFFVADEVAGPDGPLAE YGLVADPELAKTQEAVAAEATMGGNS
Sequences:
>Translated_346_residues MSFVKLTASTLAIAAVSATAASAREQVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESGGSSAGLKRFCEGVGENTIDI ANASRAIKEKEIKACAEAGVTDIIEVRIGYDGIVFASDIDGNGFEFTPTDWFLALSDKVVVDGALVDNPNKTWADVNAAF PAQPIQAFIPGTKHGTREVFEDKVILAGCEETGAFDLLKEANGGDKKAAEKACIALRTDGVSVDIDGDYTETLARIDSNK DGIGVFGLAFYENNTDKLQVATMSGVVPSTESIATGEYPVSRPLYFYVKKAHIGVIPGLKEFAEFFVADEVAGPDGPLAE YGLVADPELAKTQEAVAAEATMGGNS >Mature_345_residues SFVKLTASTLAIAAVSATAASAREQVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESGGSSAGLKRFCEGVGENTIDIA NASRAIKEKEIKACAEAGVTDIIEVRIGYDGIVFASDIDGNGFEFTPTDWFLALSDKVVVDGALVDNPNKTWADVNAAFP AQPIQAFIPGTKHGTREVFEDKVILAGCEETGAFDLLKEANGGDKKAAEKACIALRTDGVSVDIDGDYTETLARIDSNKD GIGVFGLAFYENNTDKLQVATMSGVVPSTESIATGEYPVSRPLYFYVKKAHIGVIPGLKEFAEFFVADEVAGPDGPLAEY GLVADPELAKTQEAVAAEATMGGNS
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36260; Mature: 36129
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFVKLTASTLAIAAVSATAASAREQVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESG CCEEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHCC GSSAGLKRFCEGVGENTIDIANASRAIKEKEIKACAEAGVTDIIEVRIGYDGIVFASDID CCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCC GNGFEFTPTDWFLALSDKVVVDGALVDNPNKTWADVNAAFPAQPIQAFIPGTKHGTREVF CCCCEECCCCEEEEECCEEEEEEEEECCCCCCEEECCCCCCCCCHHHHCCCCCCCCHHHH EDKVILAGCEETGAFDLLKEANGGDKKAAEKACIALRTDGVSVDIDGDYTETLARIDSNK CCCEEEEECCCCCHHHHHHHCCCCCHHHHHHEEEEEEECCEEEEECCCHHHHHHHHCCCC DGIGVFGLAFYENNTDKLQVATMSGVVPSTESIATGEYPVSRPLYFYVKKAHIGVIPGLK CCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCHH EFAEFFVADEVAGPDGPLAEYGLVADPELAKTQEAVAAEATMGGNS HHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SFVKLTASTLAIAAVSATAASAREQVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESG CEEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHCC GSSAGLKRFCEGVGENTIDIANASRAIKEKEIKACAEAGVTDIIEVRIGYDGIVFASDID CCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCC GNGFEFTPTDWFLALSDKVVVDGALVDNPNKTWADVNAAFPAQPIQAFIPGTKHGTREVF CCCCEECCCCEEEEECCEEEEEEEEECCCCCCEEECCCCCCCCCHHHHCCCCCCCCHHHH EDKVILAGCEETGAFDLLKEANGGDKKAAEKACIALRTDGVSVDIDGDYTETLARIDSNK CCCEEEEECCCCCHHHHHHHCCCCCHHHHHHEEEEEEECCEEEEECCCHHHHHHHHCCCC DGIGVFGLAFYENNTDKLQVATMSGVVPSTESIATGEYPVSRPLYFYVKKAHIGVIPGLK CCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCHH EFAEFFVADEVAGPDGPLAEYGLVADPELAKTQEAVAAEATMGGNS HHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA