| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is typA [H]
Identifier: 99081076
GI number: 99081076
Start: 1330689
End: 1332509
Strand: Reverse
Name: typA [H]
Synonym: TM1040_1235
Alternate gene names: 99081076
Gene position: 1332509-1330689 (Counterclockwise)
Preceding gene: 99081077
Following gene: 99081070
Centisome position: 41.63
GC content: 61.78
Gene sequence:
>1821_bases ATGGACCTGCGCAATATTGCGATCATCGCGCACGTTGACCACGGCAAAACCACTCTGGTTGACGAGCTTCTGAAACAATC CGGCGCCTTTCGCGAAAACCAGGCCGTGGCTGAACGCGCCATGGACTCCAACGATCTGGAACGCGAGCGCGGCATCACCA TCCTGGCCAAAGCCACCTCGGTAGAATGGAACGGCACGCGGATCAACATCGTCGACACCCCCGGCCACGCCGACTTTGGT GGCGAAGTAGAACGCATCCTCTCCATGGTGGACGGTGTTGTTCTGCTTGTGGACGCCGCCGAAGGCCCGATGCCGCAGAC CAAATTCGTGACCTCGAAAGCGCTTGCGCTGGGCCTTCGCCCGATCGTTGTGCTGAACAAGGTCGACAAGCCCGATGCCG AGCCCGACCGCGCGCTCGACGAGTGTTTTGACTTGTTTGCAAACCTCGGTGCGGACGACGATCAGCTCGACTTCCCCTCC ATGTATGCGTCCGGCCGCTCCGGCTGGGCCGATATGGAACTGGATGGTCCGCGCAAGGATCTCTCGGCGCTGTTTGACCT CATCGTAAAGCACGTCCCCGCGCCCAAGCAGATCGCGCAGAAGGATGAACCCTTCCGCATGCTCGCAACCACGCTCGGCT CCGACCCTTTCATGGGCCGCATCCTGACCGGACGTGTGGAAAGCGGCACGCTCAAGGTGGGCGACAGCCTAAAGGCGCTG ACTCGTGAGGGCGAGTTGATCGAGAACTTCCGTGCCACCAAGATCCTCGCGTTCCGTGGTCTGGCCCAGCAGCCGATCGA TCTCGCCGAAGCTGGCGACATCGTGACCATCGCCGGCATGGCAAAGGCCACCGTTGCGGATTCGCTTGTGGACACCTCCG TTACCGAAGCCCTGCCCGCCCAGCCGATCGATCCGCCGACGATCACCGTGACCTTTGGCATCAACGACAGCCCTCTGGCG GGTCGTGATGGCAAGAAAGTCCAGTCGCGCGTGATCCGGGATCGCCTCCTGAAAGAGGCCGAGCTCAATGTCGCCATCGA GGTCACCGACACCCCCGGCGGTGAGGCCTTTGAGGTCGCAGGTCGTGGCGAATTGCAGATGGGCGTTCTCATCGAGAACA TGCGCCGCGAGGGCTTTGAACTCTCTATTTCGCGCCCGCAGGTTCTGTTCAAAGAAGAGAACGGTCAGCGCATGGAGCCG GTCGAGGAAGCCACCATTGACGTGGATGACGAATACTCCGGCGTGGTGATCGAAAAGCTCACCGGCAACCGCAAGGGCGA GCTCGTAGAGATGAAGCCCGCCGGTGCAGGCAAGACCCGCATCATCGCCCATGTCCCGTCACGTGGCCTCATCGGGTATC ACGGTGAATTCCTCACCGACACCCGCGGCACCGGTGTTCTGAACCGCGTGTTCCACGGCTGGACCCCGCACAAGGGCGCC ATCCCGGGCCGTCGCGCGGGCGTGCTGATCTCAATGGAGAACGGTCAATCCGTGGCCTATGCGCTGTGGAACCTCGAAGA GCGTGGCAAGATGTTTATCGGCGCACAAGCCGACGTCTACACCGGCATGATCATTGGCGAGCACAGCCGCGACAATGATC TCGAGGTGAACCCGCTCAAGGGAAAGAAGCTCACCAACGTGCGGGCCTCTGGCTCTGATGACGCCGTGCGCCTGACCACG CCCGTCACGCTCTCGCTGGAAGAGGCGATTGCCTATATCAACGACGACGAGCTGGTCGAAGTGACGCCGAACTCCGTGCG TCTGCGCAAGCGCTACCTCGATCCGCATGAGCGCAAGCGGATGGCCAAGGCGAACAGCTGA
Upstream 100 bases:
>100_bases CGGCAGTGCGGCGACAGTTGTGGCTTTGTCCCTCTTTTGCACTAGCCATGGGGGCTTTATCGCGGTATGCGCCCGGCAAC CCCAATCAAAGGCATACCTC
Downstream 100 bases:
>100_bases TCGCCCCCTCAGAAATGCAAAAAGGCCCGGTCAAAACTGACCGGGCCTTTTCATTTGAGCGCTTGGTATCAGAATTGAGG GACAAAGTCCTCGATCTCCG
Product: GTP-binding protein TypA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 606
Protein sequence:
>606_residues MDLRNIAIIAHVDHGKTTLVDELLKQSGAFRENQAVAERAMDSNDLERERGITILAKATSVEWNGTRINIVDTPGHADFG GEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLRPIVVLNKVDKPDAEPDRALDECFDLFANLGADDDQLDFPS MYASGRSGWADMELDGPRKDLSALFDLIVKHVPAPKQIAQKDEPFRMLATTLGSDPFMGRILTGRVESGTLKVGDSLKAL TREGELIENFRATKILAFRGLAQQPIDLAEAGDIVTIAGMAKATVADSLVDTSVTEALPAQPIDPPTITVTFGINDSPLA GRDGKKVQSRVIRDRLLKEAELNVAIEVTDTPGGEAFEVAGRGELQMGVLIENMRREGFELSISRPQVLFKEENGQRMEP VEEATIDVDDEYSGVVIEKLTGNRKGELVEMKPAGAGKTRIIAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHGWTPHKGA IPGRRAGVLISMENGQSVAYALWNLEERGKMFIGAQADVYTGMIIGEHSRDNDLEVNPLKGKKLTNVRASGSDDAVRLTT PVTLSLEEAIAYINDDELVEVTPNSVRLRKRYLDPHERKRMAKANS
Sequences:
>Translated_606_residues MDLRNIAIIAHVDHGKTTLVDELLKQSGAFRENQAVAERAMDSNDLERERGITILAKATSVEWNGTRINIVDTPGHADFG GEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLRPIVVLNKVDKPDAEPDRALDECFDLFANLGADDDQLDFPS MYASGRSGWADMELDGPRKDLSALFDLIVKHVPAPKQIAQKDEPFRMLATTLGSDPFMGRILTGRVESGTLKVGDSLKAL TREGELIENFRATKILAFRGLAQQPIDLAEAGDIVTIAGMAKATVADSLVDTSVTEALPAQPIDPPTITVTFGINDSPLA GRDGKKVQSRVIRDRLLKEAELNVAIEVTDTPGGEAFEVAGRGELQMGVLIENMRREGFELSISRPQVLFKEENGQRMEP VEEATIDVDDEYSGVVIEKLTGNRKGELVEMKPAGAGKTRIIAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHGWTPHKGA IPGRRAGVLISMENGQSVAYALWNLEERGKMFIGAQADVYTGMIIGEHSRDNDLEVNPLKGKKLTNVRASGSDDAVRLTT PVTLSLEEAIAYINDDELVEVTPNSVRLRKRYLDPHERKRMAKANS >Mature_606_residues MDLRNIAIIAHVDHGKTTLVDELLKQSGAFRENQAVAERAMDSNDLERERGITILAKATSVEWNGTRINIVDTPGHADFG GEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLRPIVVLNKVDKPDAEPDRALDECFDLFANLGADDDQLDFPS MYASGRSGWADMELDGPRKDLSALFDLIVKHVPAPKQIAQKDEPFRMLATTLGSDPFMGRILTGRVESGTLKVGDSLKAL TREGELIENFRATKILAFRGLAQQPIDLAEAGDIVTIAGMAKATVADSLVDTSVTEALPAQPIDPPTITVTFGINDSPLA GRDGKKVQSRVIRDRLLKEAELNVAIEVTDTPGGEAFEVAGRGELQMGVLIENMRREGFELSISRPQVLFKEENGQRMEP VEEATIDVDDEYSGVVIEKLTGNRKGELVEMKPAGAGKTRIIAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHGWTPHKGA IPGRRAGVLISMENGQSVAYALWNLEERGKMFIGAQADVYTGMIIGEHSRDNDLEVNPLKGKKLTNVRASGSDDAVRLTT PVTLSLEEAIAYINDDELVEVTPNSVRLRKRYLDPHERKRMAKANS
Specific function: Not known; probably interacts with the ribosomes in a GTP dependent manner [H]
COG id: COG1217
COG function: function code T; Predicted membrane GTPase involved in stress response
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. TypA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=464, Percent_Identity=28.8793103448276, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI94966754, Length=152, Percent_Identity=39.4736842105263, Blast_Score=115, Evalue=8e-26, Organism=Homo sapiens, GI18390331, Length=144, Percent_Identity=41.6666666666667, Blast_Score=109, Evalue=8e-24, Organism=Homo sapiens, GI19923640, Length=140, Percent_Identity=42.1428571428571, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI25306283, Length=140, Percent_Identity=42.1428571428571, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI25306287, Length=140, Percent_Identity=42.1428571428571, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI4503483, Length=145, Percent_Identity=35.8620689655172, Blast_Score=100, Evalue=7e-21, Organism=Homo sapiens, GI34147630, Length=281, Percent_Identity=29.8932384341637, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI310132016, Length=111, Percent_Identity=41.4414414414414, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI310110807, Length=111, Percent_Identity=41.4414414414414, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI310123363, Length=111, Percent_Identity=41.4414414414414, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI217272892, Length=136, Percent_Identity=36.0294117647059, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI217272894, Length=136, Percent_Identity=36.0294117647059, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI5729864, Length=314, Percent_Identity=27.3885350318471, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI223555963, Length=314, Percent_Identity=27.3885350318471, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI94966752, Length=148, Percent_Identity=28.3783783783784, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI53729339, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI53729337, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI48994988, Length=603, Percent_Identity=53.5655058043118, Blast_Score=640, Evalue=0.0, Organism=Escherichia coli, GI1788922, Length=554, Percent_Identity=25.4512635379061, Blast_Score=128, Evalue=9e-31, Organism=Escherichia coli, GI1789738, Length=137, Percent_Identity=40.8759124087591, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1789737, Length=244, Percent_Identity=29.0983606557377, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1790412, Length=244, Percent_Identity=29.0983606557377, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1790835, Length=144, Percent_Identity=29.8611111111111, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1789559, Length=136, Percent_Identity=37.5, Blast_Score=68, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17557151, Length=241, Percent_Identity=34.0248962655602, Blast_Score=128, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17533571, Length=144, Percent_Identity=45.8333333333333, Blast_Score=115, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17556745, Length=140, Percent_Identity=42.8571428571429, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17506493, Length=217, Percent_Identity=31.3364055299539, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71988819, Length=147, Percent_Identity=35.3741496598639, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI71988811, Length=147, Percent_Identity=35.3741496598639, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17556456, Length=280, Percent_Identity=29.2857142857143, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17552882, Length=134, Percent_Identity=34.3283582089552, Blast_Score=83, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115532067, Length=269, Percent_Identity=30.1115241635688, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115532065, Length=269, Percent_Identity=30.1115241635688, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71994658, Length=151, Percent_Identity=36.4238410596026, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25141371, Length=240, Percent_Identity=27.5, Blast_Score=67, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=507, Percent_Identity=26.8244575936884, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324707, Length=202, Percent_Identity=34.1584158415842, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6320593, Length=202, Percent_Identity=34.1584158415842, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6323098, Length=148, Percent_Identity=39.8648648648649, Blast_Score=104, Evalue=5e-23, Organism=Saccharomyces cerevisiae, GI6324761, Length=274, Percent_Identity=32.1167883211679, Blast_Score=98, Evalue=3e-21, Organism=Saccharomyces cerevisiae, GI6322359, Length=148, Percent_Identity=36.4864864864865, Blast_Score=89, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6324166, Length=142, Percent_Identity=39.4366197183099, Blast_Score=87, Evalue=5e-18, Organism=Drosophila melanogaster, GI78706572, Length=519, Percent_Identity=27.3603082851638, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI24582462, Length=144, Percent_Identity=42.3611111111111, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI24585711, Length=168, Percent_Identity=33.9285714285714, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585713, Length=168, Percent_Identity=33.9285714285714, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585709, Length=168, Percent_Identity=33.9285714285714, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI28574573, Length=137, Percent_Identity=38.6861313868613, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI281363316, Length=232, Percent_Identity=30.6034482758621, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI17864358, Length=232, Percent_Identity=30.6034482758621, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI221458488, Length=144, Percent_Identity=42.3611111111111, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357743, Length=171, Percent_Identity=35.0877192982456, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI19921738, Length=231, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI28572034, Length=299, Percent_Identity=26.7558528428094, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR006298 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 66068; Mature: 66068
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLRNIAIIAHVDHGKTTLVDELLKQSGAFRENQAVAERAMDSNDLERERGITILAKATS CCCCEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEEEE VEWNGTRINIVDTPGHADFGGEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLR EEECCCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCC PIVVLNKVDKPDAEPDRALDECFDLFANLGADDDQLDFPSMYASGRSGWADMELDGPRKD EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH LSALFDLIVKHVPAPKQIAQKDEPFRMLATTLGSDPFMGRILTGRVESGTLKVGDSLKAL HHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCHHHHH TREGELIENFRATKILAFRGLAQQPIDLAEAGDIVTIAGMAKATVADSLVDTSVTEALPA HHCCHHHHHHHHHEEEEECCCCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCC QPIDPPTITVTFGINDSPLAGRDGKKVQSRVIRDRLLKEAELNVAIEVTDTPGGEAFEVA CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEC GRGELQMGVLIENMRREGFELSISRPQVLFKEENGQRMEPVEEATIDVDDEYSGVVIEKL CCCCEEEHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCHHHCEECCCCCCCCEEEEEC TGNRKGELVEMKPAGAGKTRIIAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHGWTPHKGA CCCCCCCEEEECCCCCCCCEEEEECCCCCCEEECCCEECCCCCCHHHHHHHCCCCCCCCC IPGRRAGVLISMENGQSVAYALWNLEERGKMFIGAQADVYTGMIIGEHSRDNDLEVNPLK CCCCCCEEEEEECCCCEEEEEEECHHHCCCEEEECCCCEEEEEEEECCCCCCCEEECCCC GKKLTNVRASGSDDAVRLTTPVTLSLEEAIAYINDDELVEVTPNSVRLRKRYLDPHERKR CCEEEEEECCCCCCEEEEECCEEEEHHHHHHCCCCCCEEEECCCHHHHHHHHCCHHHHHH MAKANS HHCCCC >Mature Secondary Structure MDLRNIAIIAHVDHGKTTLVDELLKQSGAFRENQAVAERAMDSNDLERERGITILAKATS CCCCEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEEEE VEWNGTRINIVDTPGHADFGGEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLR EEECCCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCC PIVVLNKVDKPDAEPDRALDECFDLFANLGADDDQLDFPSMYASGRSGWADMELDGPRKD EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH LSALFDLIVKHVPAPKQIAQKDEPFRMLATTLGSDPFMGRILTGRVESGTLKVGDSLKAL HHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCHHHHH TREGELIENFRATKILAFRGLAQQPIDLAEAGDIVTIAGMAKATVADSLVDTSVTEALPA HHCCHHHHHHHHHEEEEECCCCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCC QPIDPPTITVTFGINDSPLAGRDGKKVQSRVIRDRLLKEAELNVAIEVTDTPGGEAFEVA CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEC GRGELQMGVLIENMRREGFELSISRPQVLFKEENGQRMEPVEEATIDVDDEYSGVVIEKL CCCCEEEHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCHHHCEECCCCCCCCEEEEEC TGNRKGELVEMKPAGAGKTRIIAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHGWTPHKGA CCCCCCCEEEECCCCCCCCEEEEECCCCCCEEECCCEECCCCCCHHHHHHHCCCCCCCCC IPGRRAGVLISMENGQSVAYALWNLEERGKMFIGAQADVYTGMIIGEHSRDNDLEVNPLK CCCCCCEEEEEECCCCEEEEEEECHHHCCCEEEECCCCEEEEEEEECCCCCCCEEECCCC GKKLTNVRASGSDDAVRLTTPVTLSLEEAIAYINDDELVEVTPNSVRLRKRYLDPHERKR CCEEEEEECCCCCCEEEEECCEEEEHHHHHHCCCCCCEEEECCCHHHHHHHHCCHHHHHH MAKANS HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]