| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080661
Identifier: 99080661
GI number: 99080661
Start: 863936
End: 864880
Strand: Direct
Name: 99080661
Synonym: TM1040_0820
Alternate gene names: NA
Gene position: 863936-864880 (Clockwise)
Preceding gene: 99080660
Following gene: 99080662
Centisome position: 26.99
GC content: 56.83
Gene sequence:
>945_bases ATGAGCCTGAGAATGATCGAGCCAGAGACGATTGACGACGCCGCATTTGTGTCCTCGACCGTTCCCGAAACTGACGCGCC CGTCTGGGATGTATCAACTGACTATCCGTTCTCTGATCCGGACAACCCAGAAGAGGTGATTGTCGAAGAGGGGCAGCATG CGATCTACCGCGCTGTCGCTCCCTCGGGGCCCAGCCATGGTGGCGCAGTCGATCCTGCCACCGACACGGGGAACACCAAA TGGGTGAAAATCCGCTCTACCAACCGTTGGCGGGTCTTCGATGAGTATATCGGCGACCCGAGTGTCCAGGCAAATAGCGC GCAATGGGTGATAACCGCGCCCAACGTGATCGACAGTGTGGCTTTGTTCGGGCTCTACGCTCTGTCGGTGACGGTCCTTG TTCGCGACAGTGGTGGGGCCGAGGTCTACAATCAGACATACTCACTGCAGGATGAGAACAGTGTGGTTGATCTCTACACC TACCTCACCAGCCCGATTATCCTCAGTGACCGCTTGGTCATCACAGATATTCCGCCCTACGCGGGTGCAAAGGTGACTGT CACTGCGGAGGCATCCGGAGAGGACATAGAGGTCGGGCAGATCGTGATCGGCCGGAAAGAAGAGCTCGGCGTCACGATTG ATGAGATCCCGCTGTCTATTCAGGACTTCTCCCGCAAAGAGCGCGACCCTGATTTTGGTCGGGTGTCGCTGTTGGAGAAG GACTTTGCGGACGAAATGCCCGTCGCATTTGTCTTCCCGACCTCGCGCGCTTCCTACCTGAAAAGCCGTCTGGCAAGCCG TCGTGCCAAACTGACGGTCTACAGCAGCGATGGGCCGTACAAGGCCAATGAGTTTTCCGTCTACGGATTTTATCAGTCCT TTCAGGTCGTTCCCCGCATCGGGATCGAGTCTGAGGGCATTCTCGAACTGGAGAGTATCACATGA
Upstream 100 bases:
>100_bases TTCTGGAGTCCCATGCGCGCGCAACGACTTACAACACAGGCAAGTCGATGCGGACGCACACCAAATGGGACAGAGATGGT GTGCCGAAGGAGCGGACTTA
Downstream 100 bases:
>100_bases GCGATCCGACGATCACACCGCCGCCAGATGCACCATCTCGTCAGCAGCCGTCTACCTTCTCCGCGCGGGGAGATGCGTTC TTTGCCTGGATGGTCACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSLRMIEPETIDDAAFVSSTVPETDAPVWDVSTDYPFSDPDNPEEVIVEEGQHAIYRAVAPSGPSHGGAVDPATDTGNTK WVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYT YLTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDIEVGQIVIGRKEELGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGIESEGILELESIT
Sequences:
>Translated_314_residues MSLRMIEPETIDDAAFVSSTVPETDAPVWDVSTDYPFSDPDNPEEVIVEEGQHAIYRAVAPSGPSHGGAVDPATDTGNTK WVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYT YLTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDIEVGQIVIGRKEELGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGIESEGILELESIT >Mature_313_residues SLRMIEPETIDDAAFVSSTVPETDAPVWDVSTDYPFSDPDNPEEVIVEEGQHAIYRAVAPSGPSHGGAVDPATDTGNTKW VKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYTY LTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDIEVGQIVIGRKEELGVTIDEIPLSIQDFSRKERDPDFGRVSLLEKD FADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGIESEGILELESIT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34541; Mature: 34410
Theoretical pI: Translated: 4.10; Mature: 4.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRMIEPETIDDAAFVSSTVPETDAPVWDVSTDYPFSDPDNPEEVIVEEGQHAIYRAVA CCCEECCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHEECCCEEEEEEEC PSGPSHGGAVDPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSV CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHH ALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYTYLTSPIILSDRLVITDIPPY HHHHHHEEEEEEEEECCCCCEEECCEECCCCCCCEEEEEHHHCCCEEEECCEEEEECCCC AGAKVTVTAEASGEDIEVGQIVIGRKEELGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK CCCEEEEEECCCCCCEEECEEEECCHHHHCEEHHHCCCCHHHHHHHCCCCCCCEEEHHHH DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRI HHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECC GIESEGILELESIT CCCCCCEEEEECCC >Mature Secondary Structure SLRMIEPETIDDAAFVSSTVPETDAPVWDVSTDYPFSDPDNPEEVIVEEGQHAIYRAVA CCEECCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHEECCCEEEEEEEC PSGPSHGGAVDPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSV CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECCHHHHHH ALFGLYALSVTVLVRDSGGAEVYNQTYSLQDENSVVDLYTYLTSPIILSDRLVITDIPPY HHHHHHEEEEEEEEECCCCCEEECCEECCCCCCCEEEEEHHHCCCEEEECCEEEEECCCC AGAKVTVTAEASGEDIEVGQIVIGRKEELGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK CCCEEEEEECCCCCCEEECEEEECCHHHHCEEHHHCCCCHHHHHHHCCCCCCCEEEHHHH DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRI HHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECC GIESEGILELESIT CCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA