| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080662
Identifier: 99080662
GI number: 99080662
Start: 864877
End: 866394
Strand: Direct
Name: 99080662
Synonym: TM1040_0821
Alternate gene names: NA
Gene position: 864877-866394 (Clockwise)
Preceding gene: 99080661
Following gene: 99080663
Centisome position: 27.02
GC content: 52.7
Gene sequence:
>1518_bases ATGAGCGATCCGACGATCACACCGCCGCCAGATGCACCATCTCGTCAGCAGCCGTCTACCTTCTCCGCGCGGGGAGATGC GTTCTTTGCCTGGATGGTCACTTTTGCCGGTGAGGTAACAACTGTCATTTCGTGGGTCTCGGAAAAGGTCACCGAAATCG CGGGCAGCGTAGCCGCAGCGTCTGATAGTGCGGCTGCGGCGTCTACAAGCGCCTCGCAAGCCGCGCAGTCTGCTCTGACT GCGGCGGGGGCTGCCAACTATCAAGGCGACTATGACGCTGGGACGCTATACGCGGTTGGCGAAAGTGTTTCCTACACGGG TAGCGAATTTGTCAAAAAGACCACTGCGCCTGCTGGAACTACGCCGGTCGATGGTACCGATTGGCTTGAGGTCGGGAACG CCGCAGTTACAAGCAAAGCCTTGACTCTAACCGGGACGTCTCCCGCTTTGGATTTGTCAGTTGCTGATTTCTTCGACTTG ACCCTCACTGGCGACACGACGTTGTCTTTTGTTAATGCACCAGTGGCGGGTACTGTCAAAAACTTCACCCTAAAACTGAC AGGTGGTTCCGAGAACGCAGGTTTCGCTCTGGCATCAGCGACTTACGATAGTGTTTCTTTTTCGGTGGGCGCACAGGGAA CTGAACCAAAATCTATAACCTTCAAGCCAGACGGCACAAAGATGTTCGTCAGTGACGGTAGCACCCCGGACTCCATATAC CAGTATAGTCTGTCAACAGCTTGGGATTTGTCCACCGCCAGTTACGACAGCGCCTCATTCAATGTGACTTCGCAGGTGGG AGTAGTTGAAGGCGTAGAGTTTAGTTCAGACGGCACGAAAATGTTCGTCCTCGATTTCAACAGTGACAGGGTCTACCAAT ACACTCTGTCAACAGCTTGGGATTTATCCACCGCCAGTTACGACAGTGTTTCGTATCTTGTGCCGTCACCGGTGACACAA CCTCAAGGCTTAGCGTTTAAGTCCGACGGCATGAAAATGTACGTGCAAGGCTACGGTCCGAGCGAGGGGATTTCTCAGTT CACGCTCTCTACTGCGTGGGACTTGTCTACGGCCAGTTACGACAGCGTCAATTTTGACTTCACTGCACCGTCTGTAGGTT TCGCTGTGAACATGTCCATCTCAAGCGACGGAACGAAGATATTTTTACAGAACTCCAGTTCTGTAATTCAGTACAACTTG TCGACAGCCTGGGACTTGTCTACGGCGACCTACTCTGGGGTTTCGTTTTCCGTGTCCGCTCAAGACACTGCGATGAAACA CGCAGTTTTCAAACCAGATGGTACAAAAATGTACGTTGCTGGTGACACCAACAACACCCTATTCCAGTATTCCACTGACG TCGATGTTGAATTCACTTTGACATACCCGACGATACGGTGGCCGGGCGGTGTTGCTCCAACAGTTGCGTCAGATGGTGAA ACGGACCTGATATACTTTACCACGCGCGATGGGGGCACCACGTTCTACGGCACGAAACGAGGAGACGCGTACTCATGA
Upstream 100 bases:
>100_bases AGGCCAATGAGTTTTCCGTCTACGGATTTTATCAGTCCTTTCAGGTCGTTCCCCGCATCGGGATCGAGTCTGAGGGCATT CTCGAACTGGAGAGTATCAC
Downstream 100 bases:
>100_bases CTTATGCTTTGGTGAGAGACGGAATTTTAACCCGCTATCCCTACTCCCTCGAAGACCTTCGTCGCGACAACCCTCGCTTG AGTCTGCCGCCCACTCTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 505; Mature: 504
Protein sequence:
>505_residues MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAGEVTTVISWVSEKVTEIAGSVAAASDSAAAASTSASQAAQSALT AAGAANYQGDYDAGTLYAVGESVSYTGSEFVKKTTAPAGTTPVDGTDWLEVGNAAVTSKALTLTGTSPALDLSVADFFDL TLTGDTTLSFVNAPVAGTVKNFTLKLTGGSENAGFALASATYDSVSFSVGAQGTEPKSITFKPDGTKMFVSDGSTPDSIY QYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTASYDSVSYLVPSPVTQ PQGLAFKSDGMKMYVQGYGPSEGISQFTLSTAWDLSTASYDSVNFDFTAPSVGFAVNMSISSDGTKIFLQNSSSVIQYNL STAWDLSTATYSGVSFSVSAQDTAMKHAVFKPDGTKMYVAGDTNNTLFQYSTDVDVEFTLTYPTIRWPGGVAPTVASDGE TDLIYFTTRDGGTTFYGTKRGDAYS
Sequences:
>Translated_505_residues MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAGEVTTVISWVSEKVTEIAGSVAAASDSAAAASTSASQAAQSALT AAGAANYQGDYDAGTLYAVGESVSYTGSEFVKKTTAPAGTTPVDGTDWLEVGNAAVTSKALTLTGTSPALDLSVADFFDL TLTGDTTLSFVNAPVAGTVKNFTLKLTGGSENAGFALASATYDSVSFSVGAQGTEPKSITFKPDGTKMFVSDGSTPDSIY QYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTASYDSVSYLVPSPVTQ PQGLAFKSDGMKMYVQGYGPSEGISQFTLSTAWDLSTASYDSVNFDFTAPSVGFAVNMSISSDGTKIFLQNSSSVIQYNL STAWDLSTATYSGVSFSVSAQDTAMKHAVFKPDGTKMYVAGDTNNTLFQYSTDVDVEFTLTYPTIRWPGGVAPTVASDGE TDLIYFTTRDGGTTFYGTKRGDAYS >Mature_504_residues SDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAGEVTTVISWVSEKVTEIAGSVAAASDSAAAASTSASQAAQSALTA AGAANYQGDYDAGTLYAVGESVSYTGSEFVKKTTAPAGTTPVDGTDWLEVGNAAVTSKALTLTGTSPALDLSVADFFDLT LTGDTTLSFVNAPVAGTVKNFTLKLTGGSENAGFALASATYDSVSFSVGAQGTEPKSITFKPDGTKMFVSDGSTPDSIYQ YSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTASYDSVSYLVPSPVTQP QGLAFKSDGMKMYVQGYGPSEGISQFTLSTAWDLSTASYDSVNFDFTAPSVGFAVNMSISSDGTKIFLQNSSSVIQYNLS TAWDLSTATYSGVSFSVSAQDTAMKHAVFKPDGTKMYVAGDTNNTLFQYSTDVDVEFTLTYPTIRWPGGVAPTVASDGET DLIYFTTRDGGTTFYGTKRGDAYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53000; Mature: 52869
Theoretical pI: Translated: 3.91; Mature: 3.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAGEVTTVISWVSEKVTEIAGSVAAA CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHCCCEEC SDSAAAASTSASQAAQSALTAAGAANYQGDYDAGTLYAVGESVSYTGSEFVKKTTAPAGT CCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCC TPVDGTDWLEVGNAAVTSKALTLTGTSPALDLSVADFFDLTLTGDTTLSFVNAPVAGTVK CCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCEEEEECCCCCCEEE NFTLKLTGGSENAGFALASATYDSVSFSVGAQGTEPKSITFKPDGTKMFVSDGSTPDSIY EEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCEE QYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAW EEECCCEEECCCCCCCCCCEEEEECCCEEECEEECCCCCEEEEEECCCCEEEEEEECCEE DLSTASYDSVSYLVPSPVTQPQGLAFKSDGMKMYVQGYGPSEGISQFTLSTAWDLSTASY ECCCCCCCCEEEECCCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCC DSVNFDFTAPSVGFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGVSFSVSA CCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCEEECCCEEECCEEEEEEC QDTAMKHAVFKPDGTKMYVAGDTNNTLFQYSTDVDVEFTLTYPTIRWPGGVAPTVASDGE CCHHHHHEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCEEECCCCCCCCCCCCCC TDLIYFTTRDGGTTFYGTKRGDAYS CEEEEEEECCCCEEEEECCCCCCCC >Mature Secondary Structure SDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAGEVTTVISWVSEKVTEIAGSVAAA CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHCCCEEC SDSAAAASTSASQAAQSALTAAGAANYQGDYDAGTLYAVGESVSYTGSEFVKKTTAPAGT CCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCC TPVDGTDWLEVGNAAVTSKALTLTGTSPALDLSVADFFDLTLTGDTTLSFVNAPVAGTVK CCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCEEEEECCCCCCEEE NFTLKLTGGSENAGFALASATYDSVSFSVGAQGTEPKSITFKPDGTKMFVSDGSTPDSIY EEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCEE QYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAW EEECCCEEECCCCCCCCCCEEEEECCCEEECEEECCCCCEEEEEECCCCEEEEEEECCEE DLSTASYDSVSYLVPSPVTQPQGLAFKSDGMKMYVQGYGPSEGISQFTLSTAWDLSTASY ECCCCCCCCEEEECCCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCC DSVNFDFTAPSVGFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGVSFSVSA CCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCEEECCCEEECCEEEEEEC QDTAMKHAVFKPDGTKMYVAGDTNNTLFQYSTDVDVEFTLTYPTIRWPGGVAPTVASDGE CCHHHHHEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCEEECCCCCCCCCCCCCC TDLIYFTTRDGGTTFYGTKRGDAYS CEEEEEEECCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA