Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080646

Identifier: 99080646

GI number: 99080646

Start: 852931

End: 853899

Strand: Direct

Name: 99080646

Synonym: TM1040_0805

Alternate gene names: NA

Gene position: 852931-853899 (Clockwise)

Preceding gene: 99080645

Following gene: 99080647

Centisome position: 26.65

GC content: 61.51

Gene sequence:

>969_bases
ATGTCGCTGTCCAATATGCAGGTATTCAACGACTACATCATGCCTGCGACCATCAAGTCGCTCGATCAGATGATCGACAA
ATTCAACGCAGGGTCCGCTGGCGCAATCGTGCTGTCCTCCGAGGGCATGACCGGCGACTTCATGCGCGAGAGCTTCTTTG
CCTCGCTGGCCGCCGCGCAGCGCCGAGTTAACCGCAAGGGAGCCAACGGCGCTGCCTCGGCAACTGACCTGTCCGAGCTG
ACCGGCTCCAAGGTGAAGATCGCAGGCGGCTTTGGCCCGGTGCGCTATGAGCCGTCGCAGATGACTTGGCTCCAGCGTCC
GACCCAGCAGGGCGTTCTGGCCGCGTCCACTGCTTTCGCTGAGCTGCTCCTGCAAGACCAGCTCAACACCGCGATTGCCG
CGCTTGTGGCCGCGCTGTCGAACAATGCCGCTGTGACCAACGATGTGTCCGGTTCTGCAGGCATGACCTATGGCGCGATC
AACTCGGCGCACGCCAAATTCGGCGATGCTTCCGGCCAGATCGTGGCAAACGTGATGACCGGCACCGTTGCGCACAAACT
GATCGGTGACAACTTGACCAACGGCCAGCGCCTGTTCACCGCGGGCAACGTCAACGTGATCGACATTCTCGGCAAAGCCG
TGATCGTCACCGACGCGCCGGCACTTTACGAGGCAGGCACCCCGAACAAGTCGAAAGTGCTGGGCCTTGTGCCGGGCGCC
GCGACCGTTGGCAACACCTCGGACATCATTACCAACGTCGAAACCACCAATGGCAAAGAGCGGATCGAAACCACCTTCCA
GGCGGACTACTCCTTCTCGCTGGGCCTCAAGGGCTACGGCTGGGACGAGGCCAATGGCGGCGCTTCTCCAACCGACGCAG
AGATCGCCACCGGCACCAATTGGGACAAGGTGGCCGAGTTCGACAAGATGACCGCAGGCGTAATCGCCGTGGCCGACGCT
GACCAATAA

Upstream 100 bases:

>100_bases
GCAGCCGGGATCGCAGAGCGGGACGCCTGCACACAGCAACCCCATCTTGGCGCAGGTTCCGGGTTTGGCCGACCTGCCTG
AAAAATAAAGGAGAACAGCA

Downstream 100 bases:

>100_bases
AGGCGGCTTTTTGAGGGGCTGGGAAATCCGGCCCCTTTTTCAAGCCACCAAGGAGAACAACCCATGAAAATCGCATACGA
AAAGCATCCGGTTTCGAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANGAASATDLSEL
TGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAI
NSAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA
ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADA
DQ

Sequences:

>Translated_322_residues
MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANGAASATDLSEL
TGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAI
NSAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA
ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADA
DQ
>Mature_321_residues
SLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANGAASATDLSELT
GSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAIN
SAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGAA
TVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADAD
Q

Specific function: Unknown

COG id: COG5492

COG function: function code N; Bacterial surface proteins containing Ig-like domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33361; Mature: 33229

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQ
CCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
RRVNRKGANGAASATDLSELTGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFA
HHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCEECCCHHHHHHCCCCCCCHHHHHHHH
ELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAINSAHAKFGDASGQIVANVMT
HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEECCCCCCHHCCCCCCCCEEEEHHH
GTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA
HHHHHHHHCCCCCCCCEEEEECCCEEEEECCCEEEEECCCHHHCCCCCCCCEEEEEECCC
ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTN
CCCCCCHHHEEEEECCCCHHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCEECCCC
WDKVAEFDKMTAGVIAVADADQ
HHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure 
SLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQ
CCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
RRVNRKGANGAASATDLSELTGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFA
HHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCEECCCHHHHHHCCCCCCCHHHHHHHH
ELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAINSAHAKFGDASGQIVANVMT
HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEECCCCCCHHCCCCCCCCEEEEHHH
GTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA
HHHHHHHHCCCCCCCCEEEEECCCEEEEECCCEEEEECCCHHHCCCCCCCCEEEEEECCC
ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTN
CCCCCCHHHEEEEECCCCHHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCEECCCC
WDKVAEFDKMTAGVIAVADADQ
HHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA