| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080646
Identifier: 99080646
GI number: 99080646
Start: 852931
End: 853899
Strand: Direct
Name: 99080646
Synonym: TM1040_0805
Alternate gene names: NA
Gene position: 852931-853899 (Clockwise)
Preceding gene: 99080645
Following gene: 99080647
Centisome position: 26.65
GC content: 61.51
Gene sequence:
>969_bases ATGTCGCTGTCCAATATGCAGGTATTCAACGACTACATCATGCCTGCGACCATCAAGTCGCTCGATCAGATGATCGACAA ATTCAACGCAGGGTCCGCTGGCGCAATCGTGCTGTCCTCCGAGGGCATGACCGGCGACTTCATGCGCGAGAGCTTCTTTG CCTCGCTGGCCGCCGCGCAGCGCCGAGTTAACCGCAAGGGAGCCAACGGCGCTGCCTCGGCAACTGACCTGTCCGAGCTG ACCGGCTCCAAGGTGAAGATCGCAGGCGGCTTTGGCCCGGTGCGCTATGAGCCGTCGCAGATGACTTGGCTCCAGCGTCC GACCCAGCAGGGCGTTCTGGCCGCGTCCACTGCTTTCGCTGAGCTGCTCCTGCAAGACCAGCTCAACACCGCGATTGCCG CGCTTGTGGCCGCGCTGTCGAACAATGCCGCTGTGACCAACGATGTGTCCGGTTCTGCAGGCATGACCTATGGCGCGATC AACTCGGCGCACGCCAAATTCGGCGATGCTTCCGGCCAGATCGTGGCAAACGTGATGACCGGCACCGTTGCGCACAAACT GATCGGTGACAACTTGACCAACGGCCAGCGCCTGTTCACCGCGGGCAACGTCAACGTGATCGACATTCTCGGCAAAGCCG TGATCGTCACCGACGCGCCGGCACTTTACGAGGCAGGCACCCCGAACAAGTCGAAAGTGCTGGGCCTTGTGCCGGGCGCC GCGACCGTTGGCAACACCTCGGACATCATTACCAACGTCGAAACCACCAATGGCAAAGAGCGGATCGAAACCACCTTCCA GGCGGACTACTCCTTCTCGCTGGGCCTCAAGGGCTACGGCTGGGACGAGGCCAATGGCGGCGCTTCTCCAACCGACGCAG AGATCGCCACCGGCACCAATTGGGACAAGGTGGCCGAGTTCGACAAGATGACCGCAGGCGTAATCGCCGTGGCCGACGCT GACCAATAA
Upstream 100 bases:
>100_bases GCAGCCGGGATCGCAGAGCGGGACGCCTGCACACAGCAACCCCATCTTGGCGCAGGTTCCGGGTTTGGCCGACCTGCCTG AAAAATAAAGGAGAACAGCA
Downstream 100 bases:
>100_bases AGGCGGCTTTTTGAGGGGCTGGGAAATCCGGCCCCTTTTTCAAGCCACCAAGGAGAACAACCCATGAAAATCGCATACGA AAAGCATCCGGTTTCGAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANGAASATDLSEL TGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAI NSAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADA DQ
Sequences:
>Translated_322_residues MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANGAASATDLSEL TGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAI NSAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADA DQ >Mature_321_residues SLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANGAASATDLSELT GSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAIN SAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGAA TVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADAD Q
Specific function: Unknown
COG id: COG5492
COG function: function code N; Bacterial surface proteins containing Ig-like domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33361; Mature: 33229
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQ CCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH RRVNRKGANGAASATDLSELTGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFA HHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCEECCCHHHHHHCCCCCCCHHHHHHHH ELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAINSAHAKFGDASGQIVANVMT HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEECCCCCCHHCCCCCCCCEEEEHHH GTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA HHHHHHHHCCCCCCCCEEEEECCCEEEEECCCEEEEECCCHHHCCCCCCCCEEEEEECCC ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTN CCCCCCHHHEEEEECCCCHHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCEECCCC WDKVAEFDKMTAGVIAVADADQ HHHHHHHHHHCCCEEEEECCCC >Mature Secondary Structure SLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQ CCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH RRVNRKGANGAASATDLSELTGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFA HHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCEECCCHHHHHHCCCCCCCHHHHHHHH ELLLQDQLNTAIAALVAALSNNAAVTNDVSGSAGMTYGAINSAHAKFGDASGQIVANVMT HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEECCCCCCHHCCCCCCCCEEEEHHH GTVAHKLIGDNLTNGQRLFTAGNVNVIDILGKAVIVTDAPALYEAGTPNKSKVLGLVPGA HHHHHHHHCCCCCCCCEEEEECCCEEEEECCCEEEEECCCHHHCCCCCCCCEEEEEECCC ATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYGWDEANGGASPTDAEIATGTN CCCCCCHHHEEEEECCCCHHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCEECCCC WDKVAEFDKMTAGVIAVADADQ HHHHHHHHHHCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA