Click here to switch to the map view.

The map label for this gene is xtmA [H]

Identifier: 99080641

GI number: 99080641

Start: 847787

End: 848365

Strand: Direct

Name: xtmA [H]

Synonym: TM1040_0800

Alternate gene names: 99080641

Gene position: 847787-848365 (Clockwise)

Preceding gene: 99080639

Following gene: 99080642

Centisome position: 26.49

GC content: 58.03

Gene sequence:

>579_bases
ATGGCGCTCACTGCAAAGCAGGAGCGTTTCGTTGCGGAATACCTCATTGACCTGAACGCCACTCAGGCGGCCATCAGGGC
GGGTTACAGCGCTAAGACCGCGTATTCGGTCGGGCATGAGAACCTGAAAAAACCTGAAATCGCCAAAGCGATCCAAGAGG
CCAATTCGAAGCGTTCAGAACGGACAGAAATCACGCAAGACCGGGTGCTGCAGGAGTTTGCTCGGATCGGCTTTGCGGAC
ATTCGCAAGGCTGTGGCGTGGGGCAGCACCCCTGCCGACCTTTTGGAGGGTGATGAGGGCGGCGATGAAGGAACGCCTGC
CAGCGTTTACCCTGTGGATCTGGTCCGAAGCTCTGAAGTGGACGATGACACAGCGGCAGCGATCGCCGAGGTTTCGCTTA
CCAAGGGCGGCGTGAAGCTCAAGATGCACGACAAGCTGTCAGCACTGGAGAAGCTAGCCCGACACCTGGGCATGTTGAAC
GGATCTGGGGCCGGTGACGATGATGCGCCCAGCCTTACGATCAACATCAACTCCAAAGAGCCCGTTGGTGACGTGCGTGT
CACACGATCTGACGGTTAG

Upstream 100 bases:

>100_bases
ATCGCCCACCGGCAGGATACCGGAAAGGGCGCGGCTCATTTGTCTATATCGAATCTTTCGGGCGGGATGCCCGACATCCA
CAACAGACGGGAAGTCACAC

Downstream 100 bases:

>100_bases
CGCGCCGCAGGGTGTTTTCCTAAGCGGCCTCAACACCAAGTTTCGCGCCTACGTTGGCGGGTTCGGGTCTGGCAAGACCT
ATGTGGGGTGCCTCGACCTC

Product: terminase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MALTAKQERFVAEYLIDLNATQAAIRAGYSAKTAYSVGHENLKKPEIAKAIQEANSKRSERTEITQDRVLQEFARIGFAD
IRKAVAWGSTPADLLEGDEGGDEGTPASVYPVDLVRSSEVDDDTAAAIAEVSLTKGGVKLKMHDKLSALEKLARHLGMLN
GSGAGDDDAPSLTININSKEPVGDVRVTRSDG

Sequences:

>Translated_192_residues
MALTAKQERFVAEYLIDLNATQAAIRAGYSAKTAYSVGHENLKKPEIAKAIQEANSKRSERTEITQDRVLQEFARIGFAD
IRKAVAWGSTPADLLEGDEGGDEGTPASVYPVDLVRSSEVDDDTAAAIAEVSLTKGGVKLKMHDKLSALEKLARHLGMLN
GSGAGDDDAPSLTININSKEPVGDVRVTRSDG
>Mature_191_residues
ALTAKQERFVAEYLIDLNATQAAIRAGYSAKTAYSVGHENLKKPEIAKAIQEANSKRSERTEITQDRVLQEFARIGFADI
RKAVAWGSTPADLLEGDEGGDEGTPASVYPVDLVRSSEVDDDTAAAIAEVSLTKGGVKLKMHDKLSALEKLARHLGMLNG
SGAGDDDAPSLTININSKEPVGDVRVTRSDG

Specific function: Functions as a terminase [H]

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaS and B.subtilis phage SPP1 terminase small subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018925
- InterPro:   IPR005335 [H]

Pfam domain/function: PF10668 Phage_terminase; PF03592 Terminase_2 [H]

EC number: NA

Molecular weight: Translated: 20497; Mature: 20366

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTAKQERFVAEYLIDLNATQAAIRAGYSAKTAYSVGHENLKKPEIAKAIQEANSKRSE
CCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHCHHCCCCHHHHHHHHHHHHHHHH
RTEITQDRVLQEFARIGFADIRKAVAWGSTPADLLEGDEGGDEGTPASVYPVDLVRSSEV
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHCCCCC
DDDTAAAIAEVSLTKGGVKLKMHDKLSALEKLARHLGMLNGSGAGDDDAPSLTININSKE
CCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
PVGDVRVTRSDG
CCCCEEEEECCC
>Mature Secondary Structure 
ALTAKQERFVAEYLIDLNATQAAIRAGYSAKTAYSVGHENLKKPEIAKAIQEANSKRSE
CCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHCHHCCCCHHHHHHHHHHHHHHHH
RTEITQDRVLQEFARIGFADIRKAVAWGSTPADLLEGDEGGDEGTPASVYPVDLVRSSEV
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHCCCCC
DDDTAAAIAEVSLTKGGVKLKMHDKLSALEKLARHLGMLNGSGAGDDDAPSLTININSKE
CCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
PVGDVRVTRSDG
CCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]