Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080642

Identifier: 99080642

GI number: 99080642

Start: 848343

End: 849593

Strand: Direct

Name: 99080642

Synonym: TM1040_0801

Alternate gene names: NA

Gene position: 848343-849593 (Clockwise)

Preceding gene: 99080641

Following gene: 99080643

Centisome position: 26.5

GC content: 60.91

Gene sequence:

>1251_bases
GTGTCACACGATCTGACGGTTAGCGCGCCGCAGGGTGTTTTCCTAAGCGGCCTCAACACCAAGTTTCGCGCCTACGTTGG
CGGGTTCGGGTCTGGCAAGACCTATGTGGGGTGCCTCGACCTCGGCTTGTTTGCAGGGCAGCACCCCAAGACGGTTCAGG
GATATTTCGCCCCGACGTATCGGGACATTCGAGACACCTTCTGGCCAACCGTAGACGAGGCCGCGCATTCGCTGGGGTTC
ACGACCAAGGTCAAGAGCGCCGACAAGGAGGTCGAGTTCTACCGGGGCCGCAGCTACTACGGCACCACCATTTGCCGATC
GATGGATGATCCGGGCGGCATTGTGGGCTTCAAGATCGCTCGCGCCCTGGTCGATGAGATCGACATTCTCAGCAAGGACA
AGGCGCAAGCCGCCTGGCGTAAGATCATCGCCCGGATGCGCCTGGTTCTCCCCGGCGTGGTCAACGGCATCGGCGTCACC
ACCACCCCCGAGGGGTTCCGGTTCGTCTATGACAGCTTCAAGCGGGAGCCAAAGAGCAACTATTCGATGGTGCAGGCCAG
CACCTACGAGAACGAGGCGTTCCTGCCGCCAGACTACATTTCAACCCTGCTGGAGGACTACCCCGAGGAGCTGATTAAGG
CCTACCTCATGGGGGAGTTCGTCAACCTCACGAGCGGCACCGTCTATCGCAGTTATGACCGGTTGCGGCATCGATCAACA
CAGAGCATCCAGCCGCGGGAGCCGCTGCACATTGGGCAGGACTTCAATGTTGGCAACATGGCCTCGGTGGTTTTCGTCCA
GCGCGGCGAAGATTGGCACGCGGTCGATGAGCTGCAGGGGCTGCAGGACACGCCGCATCTGATCGAGGTTCTATGCGACC
GATACGAGGGGCACCACCTCACGATCTACCCCGACGCCAGCGGTAGCAGCCGCAAGACTGTCAATGCCAGCACGTCGGAT
ATTGAGCTTCTGCGGAAAGCGGGTCACGCGATCCGGGCGCCTAGCACCAACCCGGCGGTGAAAGACCGGATCCTCGCAGT
GAATACGGCCTTCGAGAATGGCCGCCTCTTTGTGAACGCTCTCCGCTGCAAAGCCTACGCCGAAGCGCTTGAACAGCAGG
CATATGACAAGAACGGCGAGCCGGACAAATCCGCCGGTCTCGACCACCACCCAGACGCGGGCGGCTATTTCGTCCACCAG
AAAATGCCGGTCGTGAAACCGACCTTCACCCGGCAGGAGCTTCGCCTTTGA

Upstream 100 bases:

>100_bases
GCCCGACACCTGGGCATGTTGAACGGATCTGGGGCCGGTGACGATGATGCGCCCAGCCTTACGATCAACATCAACTCCAA
AGAGCCCGTTGGTGACGTGC

Downstream 100 bases:

>100_bases
CCCAATCCGTCGCACAACGCACCCCCGCAGCCGAGGCGCTGGTCAAGAGCGCCGCTCTGGGCCGAATCCTGATGGGTGGC
ACCAAGGCCATGCGTGGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGF
TTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVT
TTPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST
QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSD
IELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQ
KMPVVKPTFTRQELRL

Sequences:

>Translated_416_residues
MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGF
TTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVT
TTPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST
QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSD
IELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQ
KMPVVKPTFTRQELRL
>Mature_415_residues
SHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGFT
TKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTT
TPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRSTQ
SIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSDI
ELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQK
MPVVKPTFTRQELRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46452; Mature: 46321

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTY
CCCCEEEECCCCEEEECCCCEEHHEECCCCCCCEEEEEEHHHHHCCCCCCCEECCCCCHH
RDIRDTFWPTVDEAAHSLGFTTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIA
HHHHHHHCCCHHHHHHHCCCCEECCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHH
RALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
YSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHL
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCEE
TIYPDASGSSRKTVNASTSDIELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNA
EEEECCCCCCCCEECCCHHHHHHHHHCCCEEECCCCCCHHHHEEEEEEEECCCCCEEEHH
LRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQKMPVVKPTFTRQELRL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
SHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTY
CCCEEEECCCCEEEECCCCEEHHEECCCCCCCEEEEEEHHHHHCCCCCCCEECCCCCHH
RDIRDTFWPTVDEAAHSLGFTTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIA
HHHHHHHCCCHHHHHHHCCCCEECCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHH
RALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
YSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHL
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCEE
TIYPDASGSSRKTVNASTSDIELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNA
EEEECCCCCCCCEECCCHHHHHHHHHCCCEEECCCCCCHHHHEEEEEEEECCCCCEEEHH
LRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQKMPVVKPTFTRQELRL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA