| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080642
Identifier: 99080642
GI number: 99080642
Start: 848343
End: 849593
Strand: Direct
Name: 99080642
Synonym: TM1040_0801
Alternate gene names: NA
Gene position: 848343-849593 (Clockwise)
Preceding gene: 99080641
Following gene: 99080643
Centisome position: 26.5
GC content: 60.91
Gene sequence:
>1251_bases GTGTCACACGATCTGACGGTTAGCGCGCCGCAGGGTGTTTTCCTAAGCGGCCTCAACACCAAGTTTCGCGCCTACGTTGG CGGGTTCGGGTCTGGCAAGACCTATGTGGGGTGCCTCGACCTCGGCTTGTTTGCAGGGCAGCACCCCAAGACGGTTCAGG GATATTTCGCCCCGACGTATCGGGACATTCGAGACACCTTCTGGCCAACCGTAGACGAGGCCGCGCATTCGCTGGGGTTC ACGACCAAGGTCAAGAGCGCCGACAAGGAGGTCGAGTTCTACCGGGGCCGCAGCTACTACGGCACCACCATTTGCCGATC GATGGATGATCCGGGCGGCATTGTGGGCTTCAAGATCGCTCGCGCCCTGGTCGATGAGATCGACATTCTCAGCAAGGACA AGGCGCAAGCCGCCTGGCGTAAGATCATCGCCCGGATGCGCCTGGTTCTCCCCGGCGTGGTCAACGGCATCGGCGTCACC ACCACCCCCGAGGGGTTCCGGTTCGTCTATGACAGCTTCAAGCGGGAGCCAAAGAGCAACTATTCGATGGTGCAGGCCAG CACCTACGAGAACGAGGCGTTCCTGCCGCCAGACTACATTTCAACCCTGCTGGAGGACTACCCCGAGGAGCTGATTAAGG CCTACCTCATGGGGGAGTTCGTCAACCTCACGAGCGGCACCGTCTATCGCAGTTATGACCGGTTGCGGCATCGATCAACA CAGAGCATCCAGCCGCGGGAGCCGCTGCACATTGGGCAGGACTTCAATGTTGGCAACATGGCCTCGGTGGTTTTCGTCCA GCGCGGCGAAGATTGGCACGCGGTCGATGAGCTGCAGGGGCTGCAGGACACGCCGCATCTGATCGAGGTTCTATGCGACC GATACGAGGGGCACCACCTCACGATCTACCCCGACGCCAGCGGTAGCAGCCGCAAGACTGTCAATGCCAGCACGTCGGAT ATTGAGCTTCTGCGGAAAGCGGGTCACGCGATCCGGGCGCCTAGCACCAACCCGGCGGTGAAAGACCGGATCCTCGCAGT GAATACGGCCTTCGAGAATGGCCGCCTCTTTGTGAACGCTCTCCGCTGCAAAGCCTACGCCGAAGCGCTTGAACAGCAGG CATATGACAAGAACGGCGAGCCGGACAAATCCGCCGGTCTCGACCACCACCCAGACGCGGGCGGCTATTTCGTCCACCAG AAAATGCCGGTCGTGAAACCGACCTTCACCCGGCAGGAGCTTCGCCTTTGA
Upstream 100 bases:
>100_bases GCCCGACACCTGGGCATGTTGAACGGATCTGGGGCCGGTGACGATGATGCGCCCAGCCTTACGATCAACATCAACTCCAA AGAGCCCGTTGGTGACGTGC
Downstream 100 bases:
>100_bases CCCAATCCGTCGCACAACGCACCCCCGCAGCCGAGGCGCTGGTCAAGAGCGCCGCTCTGGGCCGAATCCTGATGGGTGGC ACCAAGGCCATGCGTGGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGF TTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVT TTPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSD IELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQ KMPVVKPTFTRQELRL
Sequences:
>Translated_416_residues MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGF TTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVT TTPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSD IELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQ KMPVVKPTFTRQELRL >Mature_415_residues SHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGFT TKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTT TPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRSTQ SIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSDI ELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQK MPVVKPTFTRQELRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46452; Mature: 46321
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTY CCCCEEEECCCCEEEECCCCEEHHEECCCCCCCEEEEEEHHHHHCCCCCCCEECCCCCHH RDIRDTFWPTVDEAAHSLGFTTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIA HHHHHHHCCCHHHHHHHCCCCEECCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHH RALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSN HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC YSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHL CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCEE TIYPDASGSSRKTVNASTSDIELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNA EEEECCCCCCCCEECCCHHHHHHHHHCCCEEECCCCCCHHHHEEEEEEEECCCCCEEEHH LRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQKMPVVKPTFTRQELRL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCC >Mature Secondary Structure SHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTY CCCEEEECCCCEEEECCCCEEHHEECCCCCCCEEEEEEHHHHHCCCCCCCEECCCCCHH RDIRDTFWPTVDEAAHSLGFTTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIA HHHHHHHCCCHHHHHHHCCCCEECCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHH RALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSN HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC YSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTVYRSYDRLRHRST CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC QSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLCDRYEGHHL CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCEE TIYPDASGSSRKTVNASTSDIELLRKAGHAIRAPSTNPAVKDRILAVNTAFENGRLFVNA EEEECCCCCCCCEECCCHHHHHHHHHCCCEEECCCCCCHHHHEEEEEEEECCCCCEEEHH LRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQKMPVVKPTFTRQELRL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA