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The map label for this gene is 99080604

Identifier: 99080604

GI number: 99080604

Start: 818815

End: 820482

Strand: Direct

Name: 99080604

Synonym: TM1040_0763

Alternate gene names: NA

Gene position: 818815-820482 (Clockwise)

Preceding gene: 99080603

Following gene: 99080611

Centisome position: 25.58

GC content: 60.67

Gene sequence:

>1668_bases
ATGAGCAGTGAAAGACTAATCTATTTGCCCCTCGGCGGGGCAGGCGAAATCGGCATGAACGCCTACGTCTACGGCTATGG
TGCGCCGGGCAAGGAACGGCTGATCCTGGTGGATCTGGGCGTGGCCTTTCCCGACATGGACACCACCCCCGGCGTGGACC
TGATCATGCCCGACATCAGCTGGCTGGCGGAACGCGCCGATCAGCTGGAGGGGATTTTCATCACCCACGCCCACGAGGAC
CACATCGGTGCAGTGGCGCATCTCTATAGCCGCCTCAATGTGCCGGTCTATGCGCGCGCCTTCACCGCCAATATCGCCCG
TCGCAAGATGGAAGAGCAGGGTCATGACCCCGACTCCGTGGTGACGATCTCGCCCTGGCCCGAAGTCACAAAGCTCGGCC
CCTTCACCATCGGCGCGGTGCCGATCTCGCACTCGATCCCGGAGTCGGGGGGTCTGGTGATCGACAGCCCCGCAGGCCGG
GTGATCCATACCGGCGATTTCAAACTGGACGCCAACCCCATCGTGGGTGAGGCCTTTGATCCCGACCTCTGGGCCGAGAT
TTCCAAAGATGGCGTGCAGGCACTGGTGTGCGATTCCACCAATGTGTTCTCGCCGCATGCGGGCCGCTCCGAAAGTGAGC
TCGGCGACAATATTACCAAGCTGATCGCAGAGGCCTCTGGCATGGTGGCGGCAACGACCTTTGCCTCCAACGTGGCGCGC
GTCAAAACGCTGGCGCAGGCTGGCGAACGGGCTGGGCGCTCGATTGTGCTTTTGGGGCGGGCCATGCGTCGCATGATCGA
AGCCTCGATCGAGACAGGTGTTCTGAGCGATTTTCCAAAGGTGATCCAGCCCGAGGAAGCGGCAGATATTCCGCGTGAAA
ACCTCATGCTGATCACCACCGGATCGCAGGGCGAACGTCGCGCCGCGACTGCGCAGCTGGCCCGTGGCAAGTATCGCGGC
ATGGAGCTCAAGGAGGGCGATCTGTTCCTGTTCTCCTCCAAGACCATTCCCGGCAATGAAAAAGGTGTGATCTGGATCAT
CAACCAGTTTTCCGAGAAGGGCGTCGATGTGGTGGATGACAGCTCTGGTCTCTATCATGTTTCTGGTCACGCCAACCGTC
CTGACCTTGAGCAGATGCATGACATCGTGAAGCCCAAGATCCTGATCCCGATGCACGGCGAGCACCGCCACCTGCGCCAG
CACGCGCGCCTCGGCGAAGAAAAGGGGATCGCCTCCGCCATTGCGGTCAATGGGATGATGATGGATCTCACCGGCGACGC
ACCCAAGGTGGCCGACTACATCGACACTGGCCGCACCTATCTGGATGGTTCGGTCAAGATCGGTGCCATGGACGGCATCG
TGCGCGACCGTATTCGTATGGCGCTCAATGGTCATGTGGTGATCACGGCCATTCTTGATGAAGAGGATGAACCGCTGGGC
GAACCCTGGGTGGACCTCAAGGGCCTCGCCGAGACCGGTCAGTCCAATGCCGCGCTCGCCGAGATCATGGAAGAGGATCT
GAACCAATTCCTGATGCGCGCGGGCAAGAAGACCCTCAAGGATGACGACAAGCTGGAGCAGGAACTGAAGCGCATTGCGC
GTCAGACGTCGCAATCCGAGATCGGCAAGAAACCTGAGGTGACCGTGATCGTCAGCCGGATGCGCTGA

Upstream 100 bases:

>100_bases
TCCAGCAGACAGCAGATCTATTTGACGCATATGAGGATGACCTGACCATGCAAGGTCTGAGGCGCATCCACGAGCATAAC
AAGGATATCGGTAATCACGC

Downstream 100 bases:

>100_bases
TCGTGGGGGAGGGGGCGCTGCCCCCTCGTGCCCCTTCGGGTCACTTCACCCCTGAGATATTTTTGAGAAGATGAAGGGCG
AGGCGCTTTATGCCTCCAAG

Product: beta-lactamase-like

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MSSERLIYLPLGGAGEIGMNAYVYGYGAPGKERLILVDLGVAFPDMDTTPGVDLIMPDISWLAERADQLEGIFITHAHED
HIGAVAHLYSRLNVPVYARAFTANIARRKMEEQGHDPDSVVTISPWPEVTKLGPFTIGAVPISHSIPESGGLVIDSPAGR
VIHTGDFKLDANPIVGEAFDPDLWAEISKDGVQALVCDSTNVFSPHAGRSESELGDNITKLIAEASGMVAATTFASNVAR
VKTLAQAGERAGRSIVLLGRAMRRMIEASIETGVLSDFPKVIQPEEAADIPRENLMLITTGSQGERRAATAQLARGKYRG
MELKEGDLFLFSSKTIPGNEKGVIWIINQFSEKGVDVVDDSSGLYHVSGHANRPDLEQMHDIVKPKILIPMHGEHRHLRQ
HARLGEEKGIASAIAVNGMMMDLTGDAPKVADYIDTGRTYLDGSVKIGAMDGIVRDRIRMALNGHVVITAILDEEDEPLG
EPWVDLKGLAETGQSNAALAEIMEEDLNQFLMRAGKKTLKDDDKLEQELKRIARQTSQSEIGKKPEVTVIVSRMR

Sequences:

>Translated_555_residues
MSSERLIYLPLGGAGEIGMNAYVYGYGAPGKERLILVDLGVAFPDMDTTPGVDLIMPDISWLAERADQLEGIFITHAHED
HIGAVAHLYSRLNVPVYARAFTANIARRKMEEQGHDPDSVVTISPWPEVTKLGPFTIGAVPISHSIPESGGLVIDSPAGR
VIHTGDFKLDANPIVGEAFDPDLWAEISKDGVQALVCDSTNVFSPHAGRSESELGDNITKLIAEASGMVAATTFASNVAR
VKTLAQAGERAGRSIVLLGRAMRRMIEASIETGVLSDFPKVIQPEEAADIPRENLMLITTGSQGERRAATAQLARGKYRG
MELKEGDLFLFSSKTIPGNEKGVIWIINQFSEKGVDVVDDSSGLYHVSGHANRPDLEQMHDIVKPKILIPMHGEHRHLRQ
HARLGEEKGIASAIAVNGMMMDLTGDAPKVADYIDTGRTYLDGSVKIGAMDGIVRDRIRMALNGHVVITAILDEEDEPLG
EPWVDLKGLAETGQSNAALAEIMEEDLNQFLMRAGKKTLKDDDKLEQELKRIARQTSQSEIGKKPEVTVIVSRMR
>Mature_554_residues
SSERLIYLPLGGAGEIGMNAYVYGYGAPGKERLILVDLGVAFPDMDTTPGVDLIMPDISWLAERADQLEGIFITHAHEDH
IGAVAHLYSRLNVPVYARAFTANIARRKMEEQGHDPDSVVTISPWPEVTKLGPFTIGAVPISHSIPESGGLVIDSPAGRV
IHTGDFKLDANPIVGEAFDPDLWAEISKDGVQALVCDSTNVFSPHAGRSESELGDNITKLIAEASGMVAATTFASNVARV
KTLAQAGERAGRSIVLLGRAMRRMIEASIETGVLSDFPKVIQPEEAADIPRENLMLITTGSQGERRAATAQLARGKYRGM
ELKEGDLFLFSSKTIPGNEKGVIWIINQFSEKGVDVVDDSSGLYHVSGHANRPDLEQMHDIVKPKILIPMHGEHRHLRQH
ARLGEEKGIASAIAVNGMMMDLTGDAPKVADYIDTGRTYLDGSVKIGAMDGIVRDRIRMALNGHVVITAILDEEDEPLGE
PWVDLKGLAETGQSNAALAEIMEEDLNQFLMRAGKKTLKDDDKLEQELKRIARQTSQSEIGKKPEVTVIVSRMR

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 60357; Mature: 60225

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSERLIYLPLGGAGEIGMNAYVYGYGAPGKERLILVDLGVAFPDMDTTPGVDLIMPDIS
CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEECCHH
WLAERADQLEGIFITHAHEDHIGAVAHLYSRLNVPVYARAFTANIARRKMEEQGHDPDSV
HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
VTISPWPEVTKLGPFTIGAVPISHSIPESGGLVIDSPAGRVIHTGDFKLDANPIVGEAFD
EEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCEEECCCCCCCCCCC
PDLWAEISKDGVQALVCDSTNVFSPHAGRSESELGDNITKLIAEASGMVAATTFASNVAR
CHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
VKTLAQAGERAGRSIVLLGRAMRRMIEASIETGVLSDFPKVIQPEEAADIPRENLMLITT
HHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCHHHCCHHHCCCCHHHCCCCCCEEEEEE
GSQGERRAATAQLARGKYRGMELKEGDLFLFSSKTIPGNEKGVIWIINQFSEKGVDVVDD
CCCCCHHHHHHHHHCCHHCCCEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEC
SSGLYHVSGHANRPDLEQMHDIVKPKILIPMHGEHRHLRQHARLGEEKGIASAIAVNGMM
CCCEEEECCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHCCHHCCCHHHHEECCEE
MDLTGDAPKVADYIDTGRTYLDGSVKIGAMDGIVRDRIRMALNGHVVITAILDEEDEPLG
EEECCCCCHHHHHHHCCCEEECCCEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
EPWVDLKGLAETGQSNAALAEIMEEDLNQFLMRAGKKTLKDDDKLEQELKRIARQTSQSE
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHH
IGKKPEVTVIVSRMR
CCCCCCEEEEEEECC
>Mature Secondary Structure 
SSERLIYLPLGGAGEIGMNAYVYGYGAPGKERLILVDLGVAFPDMDTTPGVDLIMPDIS
CCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEECCHH
WLAERADQLEGIFITHAHEDHIGAVAHLYSRLNVPVYARAFTANIARRKMEEQGHDPDSV
HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
VTISPWPEVTKLGPFTIGAVPISHSIPESGGLVIDSPAGRVIHTGDFKLDANPIVGEAFD
EEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCEEECCCCCCCCCCC
PDLWAEISKDGVQALVCDSTNVFSPHAGRSESELGDNITKLIAEASGMVAATTFASNVAR
CHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
VKTLAQAGERAGRSIVLLGRAMRRMIEASIETGVLSDFPKVIQPEEAADIPRENLMLITT
HHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCHHHCCHHHCCCCHHHCCCCCCEEEEEE
GSQGERRAATAQLARGKYRGMELKEGDLFLFSSKTIPGNEKGVIWIINQFSEKGVDVVDD
CCCCCHHHHHHHHHCCHHCCCEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEC
SSGLYHVSGHANRPDLEQMHDIVKPKILIPMHGEHRHLRQHARLGEEKGIASAIAVNGMM
CCCEEEECCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHCCHHCCCHHHHEECCEE
MDLTGDAPKVADYIDTGRTYLDGSVKIGAMDGIVRDRIRMALNGHVVITAILDEEDEPLG
EEECCCCCHHHHHHHCCCEEECCCEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
EPWVDLKGLAETGQSNAALAEIMEEDLNQFLMRAGKKTLKDDDKLEQELKRIARQTSQSE
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHH
IGKKPEVTVIVSRMR
CCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA