| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080543
Identifier: 99080543
GI number: 99080543
Start: 751184
End: 751918
Strand: Reverse
Name: 99080543
Synonym: TM1040_0702
Alternate gene names: NA
Gene position: 751918-751184 (Counterclockwise)
Preceding gene: 99080545
Following gene: 99080542
Centisome position: 23.49
GC content: 59.05
Gene sequence:
>735_bases ATGATCTTAAGATCAACAAAGTGGGCCATCGCTCTGAGTGTCTCGTTTTTAATGGCGGGCATGGACAGCGCGCGGGCAGA GGCGATCAAAGCGTACACCGCAGCCCTACCGCCCTACACGATCGCACCGGACCTCGAGATGCCGGGAATCTCTCACGAGA TTTTGGAAGAGATGTCGAAACGCTCGGGCGTGACAATCGAGATCGAATATCTTCCTTGGAAGCGCGCGCAATCGATGGCG CAGAAAACGCCGAACGCCCTGCTTTTTACCGCCGCGCGCACCGAGTCGCGTGAAACCGTCTACAAGTGGATCGCAGAGTT TATTGTGGCTGACGAAGTATTCGCGACCACCACCGAGGCGGTGAACTCTCTTGAGGACGCGCGCCAGCTCTCTCGAATTG CCACACTTGGGGGGGCGCCACGAGAAAAACGGCTCGCAAAGCTGGAGTTCGGCAATGTGCAGTCCACCCCCGATACCGCG ACGGCTGCACGTCTCTTGACCGGCGGGCGCGTGGATGCCTGGTTCACACTGAGTCAGCGCGTCCTGCACGCCGTGAAGTC AGAGGGGCTCGACCCGAGCACCATCGTGATCGGCACACCGGTGGGCAGTCTGCGCCTTTGGCTGGCTTCAAACGCCGAAT TCGATCCCGAAGTCGCCGCCAAACTTGCGCAGGCCTTTGAAGATATGAAAGCTGATGGCAGCTACGAGGCCATCGTCAGC GCCTATCTGAACTGA
Upstream 100 bases:
>100_bases CTTAATCTGAAACCCGCTTACTCAAAGTGACGCTGGGTCAATCATTTGCTTGCAGAGATCCGAATTGGCGTCTCGGCAAT GAATATGAGGTTTCTGTTTC
Downstream 100 bases:
>100_bases TCTTGGCGACAAACCTTGCCTGACTGGCGTCCCGTATGGGGCGCCAGTCCCGCGTTTCGAAGGGCAAGAACACCGCTCGC CGCCATTGCCCCTTGCTCCT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Amino Acid ABC Transporter; ABC-Type Amino Acid Transporter
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MILRSTKWAIALSVSFLMAGMDSARAEAIKAYTAALPPYTIAPDLEMPGISHEILEEMSKRSGVTIEIEYLPWKRAQSMA QKTPNALLFTAARTESRETVYKWIAEFIVADEVFATTTEAVNSLEDARQLSRIATLGGAPREKRLAKLEFGNVQSTPDTA TAARLLTGGRVDAWFTLSQRVLHAVKSEGLDPSTIVIGTPVGSLRLWLASNAEFDPEVAAKLAQAFEDMKADGSYEAIVS AYLN
Sequences:
>Translated_244_residues MILRSTKWAIALSVSFLMAGMDSARAEAIKAYTAALPPYTIAPDLEMPGISHEILEEMSKRSGVTIEIEYLPWKRAQSMA QKTPNALLFTAARTESRETVYKWIAEFIVADEVFATTTEAVNSLEDARQLSRIATLGGAPREKRLAKLEFGNVQSTPDTA TAARLLTGGRVDAWFTLSQRVLHAVKSEGLDPSTIVIGTPVGSLRLWLASNAEFDPEVAAKLAQAFEDMKADGSYEAIVS AYLN >Mature_244_residues MILRSTKWAIALSVSFLMAGMDSARAEAIKAYTAALPPYTIAPDLEMPGISHEILEEMSKRSGVTIEIEYLPWKRAQSMA QKTPNALLFTAARTESRETVYKWIAEFIVADEVFATTTEAVNSLEDARQLSRIATLGGAPREKRLAKLEFGNVQSTPDTA TAARLLTGGRVDAWFTLSQRVLHAVKSEGLDPSTIVIGTPVGSLRLWLASNAEFDPEVAAKLAQAFEDMKADGSYEAIVS AYLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26614; Mature: 26614
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILRSTKWAIALSVSFLMAGMDSARAEAIKAYTAALPPYTIAPDLEMPGISHEILEEMSK CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH RSGVTIEIEYLPWKRAQSMAQKTPNALLFTAARTESRETVYKWIAEFIVADEVFATTTEA HCCCEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH VNSLEDARQLSRIATLGGAPREKRLAKLEFGNVQSTPDTATAARLLTGGRVDAWFTLSQR HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH VLHAVKSEGLDPSTIVIGTPVGSLRLWLASNAEFDPEVAAKLAQAFEDMKADGSYEAIVS HHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH AYLN HHCC >Mature Secondary Structure MILRSTKWAIALSVSFLMAGMDSARAEAIKAYTAALPPYTIAPDLEMPGISHEILEEMSK CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH RSGVTIEIEYLPWKRAQSMAQKTPNALLFTAARTESRETVYKWIAEFIVADEVFATTTEA HCCCEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH VNSLEDARQLSRIATLGGAPREKRLAKLEFGNVQSTPDTATAARLLTGGRVDAWFTLSQR HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH VLHAVKSEGLDPSTIVIGTPVGSLRLWLASNAEFDPEVAAKLAQAFEDMKADGSYEAIVS HHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH AYLN HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA