| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080545
Identifier: 99080545
GI number: 99080545
Start: 754656
End: 756002
Strand: Reverse
Name: 99080545
Synonym: TM1040_0704
Alternate gene names: NA
Gene position: 756002-754656 (Counterclockwise)
Preceding gene: 99080546
Following gene: 99080543
Centisome position: 23.62
GC content: 63.85
Gene sequence:
>1347_bases ATGCCATTCTCTGCGCCTCCGGCAAAAGACGGTTTGAAACACCTCATGCGCCTCTTGTCTGCGCGCATGCCGCTGCCGAT CACGCGCGCGGGGGAAATCCTGCCCAGAGCCCTGCGCAGCTGGCCCGAGGCGCTGAAAAAGACCCGTGGCGCGCCGGAAA CGCTGTCATCAGAACCGCTCAGTCTTGAGGATGTGCTGACCATTCCAACGCCGGAAACCAACGCCGAGGACGAAGCCTGT GACCGCGCGATTGCCGAAGGGCAGTTCCTCGCCCGGCAGGAAGATTGGGAAAGGATCGAGGCCGAGATCCTCGCCGCTGA TACGGCGCGGCGCGCGACGCCCGGGGGGACCCCCATTGCGGATCTGATCGCCTACGGGGCGCGCGCAGATATTATCAATG CGGTGGAGCATGCGTTGAGTGAGGGTCTTAGTCTCACCGAGCGGGTGACACTCGATGGGATCATGGCGCTGGAACGCACC CGCCTTGAATGCGCGCGCACCCCGGTGATGACGACGGTTGTCGCGCTTGCTCATCTGGATATTGCCTGGGCGTTTCGACG GATCTCCAAACGCAAGTCACATCGCCAGCGTGACACCTTGCACGCCCGCGCCGAGGCCCATCACGCGCGCGCCAAAACGC TATTGTCTCAAATCCCGAATGACGCCCGCGCACGGCCCTTCGTGGCCGCCGCACGCTGCGCCCTTTACAGTGTGGAGGCT TCGGCCGGATGCAGACAAATCGCAGATGACTACTTTGACCTGATCCGGCTCGATCCCGGCAACCCGCGCCACCTGCGCGC ATTGGGCACCCATTTGGCAGAGCAAGGCGCAGAGGGGCTGCGCGCGCTTGAACTCGAAGCGCGGCGCGTTGCAGCACTGG TTCAAGCGCAGTGGGGCGCCGCCGGCTATGCTTGGGTCTATTTTGATGCGGTGGCGCAATCCGATGCGGCCTGTCTCGAG GTCGATGTGCCCTATTTCCTCGATGGGGTGGCGGACATCGTGGCCCGCGCTGCCAATCAGGAGCGGATCAATCTCCTGTC GGCCTATTGCAGCATCGCGCTGAAGCCTCAGCCCGAGACCGCAGCCGACGCCGCAGCGGTGCGCCAACAGATCGCTCAGG CCGCGCATTGGCTCATCCGTGAGCATCTGCGCGAATTGCACCCGATGGTCTGGGCGCATGCGGCGGCAGGTTTTGACAAT GACGCCCAGGTCAGGTCGTTGCGACAGTTTGCCGAGCGTGGCCGGATGGACGCGCTGCGCGCAATCGCAGAGTCCTTTCG CGACGATATCGAAGCCGGATACCGGGTCGTCTTTACCGCGGATGGACCTGAACTGACCGCCGGGTAA
Upstream 100 bases:
>100_bases CGAAATTGATCCGGTGAACACCGCGCGGCTGCCATGTTTGCGCCCCAAATCTTTCCGACAGTGGCTCCCACGAAAAGACT GCTACAACGGGAACCACCTG
Downstream 100 bases:
>100_bases GCGACGTACGATAAACCGCTCACGATCAAAAGGGGGGCTCTGCCCGCGGTGGTCCCTTCCGGCCCCCTCCCCCGGGATAT TTTCCGTTAGAAGAAGGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MPFSAPPAKDGLKHLMRLLSARMPLPITRAGEILPRALRSWPEALKKTRGAPETLSSEPLSLEDVLTIPTPETNAEDEAC DRAIAEGQFLARQEDWERIEAEILAADTARRATPGGTPIADLIAYGARADIINAVEHALSEGLSLTERVTLDGIMALERT RLECARTPVMTTVVALAHLDIAWAFRRISKRKSHRQRDTLHARAEAHHARAKTLLSQIPNDARARPFVAAARCALYSVEA SAGCRQIADDYFDLIRLDPGNPRHLRALGTHLAEQGAEGLRALELEARRVAALVQAQWGAAGYAWVYFDAVAQSDAACLE VDVPYFLDGVADIVARAANQERINLLSAYCSIALKPQPETAADAAAVRQQIAQAAHWLIREHLRELHPMVWAHAAAGFDN DAQVRSLRQFAERGRMDALRAIAESFRDDIEAGYRVVFTADGPELTAG
Sequences:
>Translated_448_residues MPFSAPPAKDGLKHLMRLLSARMPLPITRAGEILPRALRSWPEALKKTRGAPETLSSEPLSLEDVLTIPTPETNAEDEAC DRAIAEGQFLARQEDWERIEAEILAADTARRATPGGTPIADLIAYGARADIINAVEHALSEGLSLTERVTLDGIMALERT RLECARTPVMTTVVALAHLDIAWAFRRISKRKSHRQRDTLHARAEAHHARAKTLLSQIPNDARARPFVAAARCALYSVEA SAGCRQIADDYFDLIRLDPGNPRHLRALGTHLAEQGAEGLRALELEARRVAALVQAQWGAAGYAWVYFDAVAQSDAACLE VDVPYFLDGVADIVARAANQERINLLSAYCSIALKPQPETAADAAAVRQQIAQAAHWLIREHLRELHPMVWAHAAAGFDN DAQVRSLRQFAERGRMDALRAIAESFRDDIEAGYRVVFTADGPELTAG >Mature_447_residues PFSAPPAKDGLKHLMRLLSARMPLPITRAGEILPRALRSWPEALKKTRGAPETLSSEPLSLEDVLTIPTPETNAEDEACD RAIAEGQFLARQEDWERIEAEILAADTARRATPGGTPIADLIAYGARADIINAVEHALSEGLSLTERVTLDGIMALERTR LECARTPVMTTVVALAHLDIAWAFRRISKRKSHRQRDTLHARAEAHHARAKTLLSQIPNDARARPFVAAARCALYSVEAS AGCRQIADDYFDLIRLDPGNPRHLRALGTHLAEQGAEGLRALELEARRVAALVQAQWGAAGYAWVYFDAVAQSDAACLEV DVPYFLDGVADIVARAANQERINLLSAYCSIALKPQPETAADAAAVRQQIAQAAHWLIREHLRELHPMVWAHAAAGFDND AQVRSLRQFAERGRMDALRAIAESFRDDIEAGYRVVFTADGPELTAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49105; Mature: 48974
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFSAPPAKDGLKHLMRLLSARMPLPITRAGEILPRALRSWPEALKKTRGAPETLSSEPL CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SLEDVLTIPTPETNAEDEACDRAIAEGQFLARQEDWERIEAEILAADTARRATPGGTPIA CHHHEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH DLIAYGARADIINAVEHALSEGLSLTERVTLDGIMALERTRLECARTPVMTTVVALAHLD HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH IAWAFRRISKRKSHRQRDTLHARAEAHHARAKTLLSQIPNDARARPFVAAARCALYSVEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SAGCRQIADDYFDLIRLDPGNPRHLRALGTHLAEQGAEGLRALELEARRVAALVQAQWGA HHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGYAWVYFDAVAQSDAACLEVDVPYFLDGVADIVARAANQERINLLSAYCSIALKPQPET CCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCH AADAAAVRQQIAQAAHWLIREHLRELHPMVWAHAAAGFDNDAQVRSLRQFAERGRMDALR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHH AIAESFRDDIEAGYRVVFTADGPELTAG HHHHHHHHHHHCCEEEEEECCCCCCCCC >Mature Secondary Structure PFSAPPAKDGLKHLMRLLSARMPLPITRAGEILPRALRSWPEALKKTRGAPETLSSEPL CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SLEDVLTIPTPETNAEDEACDRAIAEGQFLARQEDWERIEAEILAADTARRATPGGTPIA CHHHEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH DLIAYGARADIINAVEHALSEGLSLTERVTLDGIMALERTRLECARTPVMTTVVALAHLD HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH IAWAFRRISKRKSHRQRDTLHARAEAHHARAKTLLSQIPNDARARPFVAAARCALYSVEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SAGCRQIADDYFDLIRLDPGNPRHLRALGTHLAEQGAEGLRALELEARRVAALVQAQWGA HHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGYAWVYFDAVAQSDAACLEVDVPYFLDGVADIVARAANQERINLLSAYCSIALKPQPET CCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCH AADAAAVRQQIAQAAHWLIREHLRELHPMVWAHAAAGFDNDAQVRSLRQFAERGRMDALR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHH AIAESFRDDIEAGYRVVFTADGPELTAG HHHHHHHHHHHCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA