| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080509
Identifier: 99080509
GI number: 99080509
Start: 714982
End: 715449
Strand: Reverse
Name: 99080509
Synonym: TM1040_0668
Alternate gene names: NA
Gene position: 715449-714982 (Counterclockwise)
Preceding gene: 99080510
Following gene: 99080508
Centisome position: 22.35
GC content: 58.76
Gene sequence:
>468_bases ATGCAACAGTTACTGCATAAAATCTGGTCCCAGACCTTTCAGCCCATGTTGTCGCGCCCGCGCAGATTGCAAGTGGCAGC GCTATGCTATCGCCGTGACAAGTCGGGGTGCGAAGTCCTGTTGATCACCAGCCGGGACACCGGTCGCTGGGTGGTACCAA AAGGCTGGCCAATGGAGGGCAAATCCAGCGCCGAGAGTGCCGCTCAGGAAGCCTGGGAAGAAGCTGGCGTGCGCTGTGGC CGTTTTGAGGAAACTCCTGTCGGGCGCTTTGAATATGACAAGCGCCTGAACAACGGAGCACTGGAGCCTCTGGAGACACT GGTCTACGCGATCGAAGTGCAGGAGTTGCGAGACGACTTCCCCGAAGCCCATGAACGTACCCGAAAATGGGTCAGCCCCA AGGACGCCGCAGAGATGGTGCGCGAGCCTCAACTCCAGGACCTTTTGCGCGGTTTCAGCCCATCTTGA
Upstream 100 bases:
>100_bases GAGCGCAAAGACGTTGTGCACAAGGGCGAACGGGACTATACCCCGTTGCTCAATCCTCCAAAGAGTATAAGAATTGGCCG AAAAAGGCTTCGAGCACTCG
Downstream 100 bases:
>100_bases TCCTGTCGCCCCTGAACTCCCCCGAGACTGTATCCTTTTGCATCGCGCGCGGGCCTCTCCCACGCCAGCGCGCAAAGCAG TGCGCAAGGCAGGAACTCGC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: Nudix Hydrolase; Nudix Domain Protein; Hydrolase Nudix Family; NTP Pyrophosphohydrolase Protein MuT/Nudix Family; Hydrolase NUDIX Family; NUDIX Family Hydrolase; MutT/NUDIX Family NTP Pyrophosphohydrolase; MutT Family NTP Pyrophosphatase; NTP Pyrophosphohydrolase MutT Family; NUDIX Domain-Containing Protein; NTP Pyrophosphohydrolase Protein; Hydrolase NUDIX Family Protein; Bis(5-Nucleosidyl)-Tetraphosphatase; MutT/Nudix Family Phosphohydrolase; NUDIX Superfamily Hydrolase; Orf_Bo; NUDIX Family Protein
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQEAWEEAGVRCG RFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS
Sequences:
>Translated_155_residues MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQEAWEEAGVRCG RFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS >Mature_155_residues MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQEAWEEAGVRCG RFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17905; Mature: 17905
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEG CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCC KSSAESAAQEAWEEAGVRCGRFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDF CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC PEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCC >Mature Secondary Structure MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEG CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCC KSSAESAAQEAWEEAGVRCGRFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDF CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC PEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA