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The map label for this gene is nodD2 [H]

Identifier: 99080480

GI number: 99080480

Start: 681912

End: 682865

Strand: Reverse

Name: nodD2 [H]

Synonym: TM1040_0639

Alternate gene names: 99080480

Gene position: 682865-681912 (Counterclockwise)

Preceding gene: 99080481

Following gene: 99080477

Centisome position: 21.33

GC content: 59.54

Gene sequence:

>954_bases
ATGCCTCGAATTGACATCTCTCAAATCAGCGGACGCGTGCTGCGTGTTTTCCTGACTGTCTATGACGAGAAATCAGTAAG
CCGGGCCGCGGATGTGCTCGAAAGCAGCCAATCCACCATCAGCCACAATATTGAAAAACTGCGCGGATTGCTGGGGGATG
CGCTGTTTGTGCAATCCGGACGCGGCATCGTCCCAAGCGCACGTGCGGACGTCCTGGCACCAAAGGTCCGCCGCATTCTG
ATCGAGATGGAAGGCCTGGCAGATCAGGGCATCTATGACCCCATCACCGACCCCGACCCATTTGTCATTGCGTTGAGTTC
AAGCATCCTGGATGGCGAACTTGAGACCATATATGACGCCTTGCGCCTCAGCCTGCCGCAGAAGCACCTCATGTTTCGGG
ACCTTGGCAAGCTCTCGGAGATCGAGCCCCTTCTGGAGACGCGCCAGGCGGATGTGGTTCTCACGCTGCGCCCACGGTCC
TATCCCAACACGCTCCGCCACATGGCTCTGACGCAAGACAGTTTCCGCGTGTTCTACGACCCAAATGTCAGAGGGCCGGT
CGATAGCGTCGAGGACTTTTGTGGGGCACCCCATGCCACCGTATCCTTCGGCCAGGGCAGCAAGAGCCTGCTGCAGACCG
AGCTCGAAGCACTGGCGATCCACCGACGGGTCACACTCGGGGTGCCCAACCTTTGGACCCTCATCCGGCTGATGCAGGGC
ACCGACATGATTGCAAGCTTGCCTTCCCGCTCGTCACGCCACACCACAGGCACTCTGGCATCCTCGCCCTTTCCGGTCGA
GTTGCCGCCTTTACAGTTCGATCTGGTCTGGCACCGCCGCTTTGCGGATTCTGCGCGGTTGCAGTGGTTGCTGATGACGA
TTGAAACCGCACTGGCCCAGCAAGCTCAGGACCACCCCAATGACGTTGGGCTTCGCGCGCACTCGTTCGAGTAG

Upstream 100 bases:

>100_bases
GCATTATATTCGTCCACCCGATGCCTGCTATTATTACTGCTTTATTAACAAAATTGCCCGGGTTAACCTTTGTTATCAAG
TCCTAAATTCTGGTGCGCTT

Downstream 100 bases:

>100_bases
GCTACGCCTCAATCAACAGTGCTTGCTGAGAGGCAGACTCACACGAGCTCGCTCTCACACGCCGTCGATCTCCCGACCTT
GCGAACAAATCAGCGTCGTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MPRIDISQISGRVLRVFLTVYDEKSVSRAADVLESSQSTISHNIEKLRGLLGDALFVQSGRGIVPSARADVLAPKVRRIL
IEMEGLADQGIYDPITDPDPFVIALSSSILDGELETIYDALRLSLPQKHLMFRDLGKLSEIEPLLETRQADVVLTLRPRS
YPNTLRHMALTQDSFRVFYDPNVRGPVDSVEDFCGAPHATVSFGQGSKSLLQTELEALAIHRRVTLGVPNLWTLIRLMQG
TDMIASLPSRSSRHTTGTLASSPFPVELPPLQFDLVWHRRFADSARLQWLLMTIETALAQQAQDHPNDVGLRAHSFE

Sequences:

>Translated_317_residues
MPRIDISQISGRVLRVFLTVYDEKSVSRAADVLESSQSTISHNIEKLRGLLGDALFVQSGRGIVPSARADVLAPKVRRIL
IEMEGLADQGIYDPITDPDPFVIALSSSILDGELETIYDALRLSLPQKHLMFRDLGKLSEIEPLLETRQADVVLTLRPRS
YPNTLRHMALTQDSFRVFYDPNVRGPVDSVEDFCGAPHATVSFGQGSKSLLQTELEALAIHRRVTLGVPNLWTLIRLMQG
TDMIASLPSRSSRHTTGTLASSPFPVELPPLQFDLVWHRRFADSARLQWLLMTIETALAQQAQDHPNDVGLRAHSFE
>Mature_316_residues
PRIDISQISGRVLRVFLTVYDEKSVSRAADVLESSQSTISHNIEKLRGLLGDALFVQSGRGIVPSARADVLAPKVRRILI
EMEGLADQGIYDPITDPDPFVIALSSSILDGELETIYDALRLSLPQKHLMFRDLGKLSEIEPLLETRQADVVLTLRPRSY
PNTLRHMALTQDSFRVFYDPNVRGPVDSVEDFCGAPHATVSFGQGSKSLLQTELEALAIHRRVTLGVPNLWTLIRLMQGT
DMIASLPSRSSRHTTGTLASSPFPVELPPLQFDLVWHRRFADSARLQWLLMTIETALAQQAQDHPNDVGLRAHSFE

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=278, Percent_Identity=27.6978417266187, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081684, Length=288, Percent_Identity=24.3055555555556, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35311; Mature: 35180

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRIDISQISGRVLRVFLTVYDEKSVSRAADVLESSQSTISHNIEKLRGLLGDALFVQSG
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
RGIVPSARADVLAPKVRRILIEMEGLADQGIYDPITDPDPFVIALSSSILDGELETIYDA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECHHCCCHHHHHHHH
LRLSLPQKHLMFRDLGKLSEIEPLLETRQADVVLTLRPRSYPNTLRHMALTQDSFRVFYD
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEC
PNVRGPVDSVEDFCGAPHATVSFGQGSKSLLQTELEALAIHRRVTLGVPNLWTLIRLMQG
CCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHC
TDMIASLPSRSSRHTTGTLASSPFPVELPPLQFDLVWHRRFADSARLQWLLMTIETALAQ
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHH
QAQDHPNDVGLRAHSFE
HHHCCCCCCCCEECCCC
>Mature Secondary Structure 
PRIDISQISGRVLRVFLTVYDEKSVSRAADVLESSQSTISHNIEKLRGLLGDALFVQSG
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
RGIVPSARADVLAPKVRRILIEMEGLADQGIYDPITDPDPFVIALSSSILDGELETIYDA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECHHCCCHHHHHHHH
LRLSLPQKHLMFRDLGKLSEIEPLLETRQADVVLTLRPRSYPNTLRHMALTQDSFRVFYD
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEC
PNVRGPVDSVEDFCGAPHATVSFGQGSKSLLQTELEALAIHRRVTLGVPNLWTLIRLMQG
CCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHC
TDMIASLPSRSSRHTTGTLASSPFPVELPPLQFDLVWHRRFADSARLQWLLMTIETALAQ
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHH
QAQDHPNDVGLRAHSFE
HHHCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2826389 [H]