Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080481

Identifier: 99080481

GI number: 99080481

Start: 683422

End: 683763

Strand: Reverse

Name: 99080481

Synonym: TM1040_0640

Alternate gene names: NA

Gene position: 683763-683422 (Counterclockwise)

Preceding gene: 99080482

Following gene: 99080480

Centisome position: 21.36

GC content: 52.05

Gene sequence:

>342_bases
ATGACCAAGATCACGATCCAAAAAGCAACAGGCCGATGGGTTGTGCGTTCTGGTGGCGCCATTCTGGGCGAGACGGAGAA
TGCACTGGAATTGATCGAAGGCGATCTGGCCCCAGTGATCTATTTCCCGCGCGAGGACATCGCCATGGCGTTTCTCGACA
AAACCGACAAAACAAGCCATTGCCCGCATAAAGGCGACGCCACTTATTATTCAATTGTGAATAGGTCCTCCACCGATGAA
AACGCAGTCTGGAGTTACGAAAACCCAATTGATGCAGTATCGGAGATCAAAGGCCACCTGGCTTTCATGCCGCTTGCCTC
GGTGAAGGTGGAGCAACTCTGA

Upstream 100 bases:

>100_bases
GCGGCAGAGTGGTTGAACGCGGCCTGCGCGCCGCTGTGATACATGACTGTTACAATGACCGGGCAGAAGCCTTACCAAAG
CTAGAAGGAGGGGGAACCCG

Downstream 100 bases:

>100_bases
TTATCGCCGCAGCTCGTCTGTAGGCAAAGCGGATCGGCAACCAGATCGCCAATATCCACCAAGAGTTTGTCACTTAAATC
GATAAAGCCGGGCCACGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MTKITIQKATGRWVVRSGGAILGETENALELIEGDLAPVIYFPREDIAMAFLDKTDKTSHCPHKGDATYYSIVNRSSTDE
NAVWSYENPIDAVSEIKGHLAFMPLASVKVEQL

Sequences:

>Translated_113_residues
MTKITIQKATGRWVVRSGGAILGETENALELIEGDLAPVIYFPREDIAMAFLDKTDKTSHCPHKGDATYYSIVNRSSTDE
NAVWSYENPIDAVSEIKGHLAFMPLASVKVEQL
>Mature_112_residues
TKITIQKATGRWVVRSGGAILGETENALELIEGDLAPVIYFPREDIAMAFLDKTDKTSHCPHKGDATYYSIVNRSSTDEN
AVWSYENPIDAVSEIKGHLAFMPLASVKVEQL

Specific function: Unknown

COG id: COG2343

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12484; Mature: 12353

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKITIQKATGRWVVRSGGAILGETENALELIEGDLAPVIYFPREDIAMAFLDKTDKTSH
CCEEEEEECCCEEEEECCCEEEECCCHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCC
CPHKGDATYYSIVNRSSTDENAVWSYENPIDAVSEIKGHLAFMPLASVKVEQL
CCCCCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHCCCEEEEECCCEEEECC
>Mature Secondary Structure 
TKITIQKATGRWVVRSGGAILGETENALELIEGDLAPVIYFPREDIAMAFLDKTDKTSH
CEEEEEECCCEEEEECCCEEEECCCHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCC
CPHKGDATYYSIVNRSSTDENAVWSYENPIDAVSEIKGHLAFMPLASVKVEQL
CCCCCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHCCCEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA