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The map label for this gene is ybaO [H]

Identifier: 99080422

GI number: 99080422

Start: 619356

End: 619811

Strand: Reverse

Name: ybaO [H]

Synonym: TM1040_0581

Alternate gene names: 99080422

Gene position: 619811-619356 (Counterclockwise)

Preceding gene: 99080424

Following gene: 99080421

Centisome position: 19.36

GC content: 53.29

Gene sequence:

>456_bases
ATGCTTGACGCAACAGACATCAAACTGCTCGCACAACTTCAGAAGAACGCTCAGGCCACCGCACAGGAGCTCGGAGATGT
GCTCAATCTCTCTGCCAGCCAGGCCGGACGCAGGCGCCAACGCCTGGAAGAAGATGGCTTCATCCAAAACTACGTCGCGC
GCCTTGATCCTTCAAAGCTCGGGCTTGCTGTGCAGTGTTTTGTTCAGGTGCATCTGCACAGTCACGGCCCCGATAATGCT
GCAAGCTTTGCGCGATTGGTTTCAAATCGTCCGGAAATCACTTCCGCCTGGACGATGACCGGAGAGGCCGACTACCTGCT
GCGCGTTTACTGTCATGATCTACAAGAATTAAATACGCTGCTTCACGAGATTATTCTTCCGCATCCGGCAGTTGGACGGG
TCCACAGTCAGATCGTAATGGCACAGTTAAAAGGTGATAGTCCCCTACCCGTTTAA

Upstream 100 bases:

>100_bases
TACCGCACATAATGTGCTTATTCTGCGCAACATCACCGTCCATTCTTTCCAATCATACATATTTGACGCATAGTTTCCCC
AAATGACGGGGGATTCACGC

Downstream 100 bases:

>100_bases
GGATGTGTGAACCACTGGACAGGTAGGTTGGCTTGAAACAAATCATCAGATGGAATCGCTTTCGTGTCCTTTGTCGATCG
CCGCATTGAAACCCGCCCGA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLDATDIKLLAQLQKNAQATAQELGDVLNLSASQAGRRRQRLEEDGFIQNYVARLDPSKLGLAVQCFVQVHLHSHGPDNA
ASFARLVSNRPEITSAWTMTGEADYLLRVYCHDLQELNTLLHEIILPHPAVGRVHSQIVMAQLKGDSPLPV

Sequences:

>Translated_151_residues
MLDATDIKLLAQLQKNAQATAQELGDVLNLSASQAGRRRQRLEEDGFIQNYVARLDPSKLGLAVQCFVQVHLHSHGPDNA
ASFARLVSNRPEITSAWTMTGEADYLLRVYCHDLQELNTLLHEIILPHPAVGRVHSQIVMAQLKGDSPLPV
>Mature_151_residues
MLDATDIKLLAQLQKNAQATAQELGDVLNLSASQAGRRRQRLEEDGFIQNYVARLDPSKLGLAVQCFVQVHLHSHGPDNA
ASFARLVSNRPEITSAWTMTGEADYLLRVYCHDLQELNTLLHEIILPHPAVGRVHSQIVMAQLKGDSPLPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=35.0993377483444, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1787116, Length=150, Percent_Identity=32.6666666666667, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16698; Mature: 16698

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDATDIKLLAQLQKNAQATAQELGDVLNLSASQAGRRRQRLEEDGFIQNYVARLDPSKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHH
GLAVQCFVQVHLHSHGPDNAASFARLVSNRPEITSAWTMTGEADYLLRVYCHDLQELNTL
HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
LHEIILPHPAVGRVHSQIVMAQLKGDSPLPV
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLDATDIKLLAQLQKNAQATAQELGDVLNLSASQAGRRRQRLEEDGFIQNYVARLDPSKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHH
GLAVQCFVQVHLHSHGPDNAASFARLVSNRPEITSAWTMTGEADYLLRVYCHDLQELNTL
HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
LHEIILPHPAVGRVHSQIVMAQLKGDSPLPV
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]