| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080424
Identifier: 99080424
GI number: 99080424
Start: 621175
End: 623808
Strand: Reverse
Name: 99080424
Synonym: TM1040_0583
Alternate gene names: NA
Gene position: 623808-621175 (Counterclockwise)
Preceding gene: 99080426
Following gene: 99080422
Centisome position: 19.49
GC content: 64.16
Gene sequence:
>2634_bases ATGAAACCAGAGTTCGCGCTCTCTCTTTCGTTTGATGGCATAACCGTGCTGACCCGTGGCGCGGGAGGATGGTATCGTTT GGGGTCGGTCTCGCCTGACGCCAAAGATCTGCCAGAGCAGCTTGCAAAGCTGCGCGCAGAGGCGCTGGCCCTCTCCGAAG CGCCGCTCCATGCAAAGCTGGTATTGCCGGACAGCCAAATCCGCTACCTGAGCCTTGAGACGGGCGAGTTGTCCCATGAT GCGCGCATCAGTGCGGCACGCGCCGCACTTGAGGGCGCCACCCCCTACAAGGTGGATGAACTCGCCTTTGACATCAGCGT TGATGGTGCAATCACCCATGTGGCGGCAGTTGCGCTTGTCACTCTGGACGAGGCCGAGAGTTTTGCAACCGAGCATGGAT TTGCGCCGGTGAGCTTCGTGGCCGCACCCGAAGATGCCGCCTATCTCGGCGAGCCTTTCTTTGGCACTGCACGCTCTGCG CGTCATCTCACGGTCGAGCCCGACGGCATTGCCGTCGTCGAAGTGCCGCCGCCGGCTGATCCCGCAGTTGCGAAGGGCGA TACCGCAGAGGAGCCCGATCTCTATCCCGAGAGTGCGGCAGATGATGATCTCGCACCGCGCAGCGATGCCCCGATCATCT TGCCCGCTGCGCCACCAGTCCTTGATGCTTCACCAGAAGAGGCTGCGCCGTCTACCGACGATAGCACCGACACCAAACTC GCTGACACCGAGGACGAGACCGCTGCGCAGAGCGCCGAGAGCACTTCCGCGGAAGAGCCCGAGGACATCGGTCCGGCGGT TGGTTTCAGTTCCCGCCGCAGCCGTGCGAAGCTTGAAGTAACCAGCACAAAGACCACTGCGCCCAAAGCGCCTTCTGTGA CTCCCAAGTCAGCAGGCACTTCAGAACCCGCTGCACCCAAAGCGCCAAGTGCCACGACCGCAAAAACCGGCGTGGCCCTT GCGACCTCGTCGGTACCTGCCGCCCCGAGCCTCGCCTTGCCGACGCCTGTTCTGGCCCACACGACCTCGGCGCCGCCAAA GCCGAGCCCGAGCGCAATCGCGCAACCGGTCTCGGGGCCTGCGCCGGAGCAGCTGCAAACACCGCAAGCGCGGCCCATGC GGGCGCGCTCTGGTCGGATCGGCCTTTTGGCCGCAGGTCTTGCTGCGGTTTCGGCCATTGGGGCCTGGGCCGTCGTTCAG GAGTTGCCAAATCTCTGGTCAGACCTCAAGCGCGCCGACCTGATTGAGACCGAGGACCCGGTCGCCACACCGGTTCTGGC CGCCCCTGATGCGGCTCTGGATGCCAACAAGGAGCTGACCACAACCGCACAAGGCGGTCTGGGTCTCAACCTGCCCTCCG CGCCAGCGCGCACAGTCGCGACAGGGGCAGAGACGGGTCCAGCGCCCGGCGAGCTGGCTGCTGACACGCTGACCGAGACC GACGCTGCTGTCCTCGAAGCGCTCGGCGCCCCCGTGGTCGATGAAGCCGCCCCGTTGGACGGGCAGGATCTGATCATTGC CTCCCTGCCCGCGCCGCAAGACATCACGTCTGGGACTTCTGAAACGGCCCTCGCCCCCATCGACGATGAGGCAGCGGTCT TTGACGACAGCGCCGAGATCGACCCGGAGGCGCTCGCGGATGGGGTCGTGCCAGAGGATCAACCAACAGATTTGCTCCAG GAGGCCCCGTCGGAGCTTGAACAGGCTGCACAGTATGCCGCCACCGGGATCTGGCAACAGGTTCCCGACATTGCAGACGT GCCCGCGCTGATCAGCCTCGACAACGTCTATGTGGCCTCCATCGATAATACCGAATTGTCCCAGGATGCAATTGCCCTGC CTGCGCCCGACGCATTCGAGACAGACACGCCCTTTGGTGCGGTCTCAAGCCCCACAGAAGCCGGACGCCAGTTCGACTTT GATGACCGGGGATTGGTCGTGGCGAGCCCGGATGGCACCCTCAATCCCGACGGGATCATGATCTATGCCGGTCGCCCGGT CAAAGTGCCGCCACCCACGCCAGATAGGCCCACGGAACGCGTGTTGGCCGCTGCAGAAGAAGCAGAGCGCCTCGCGTTGT TGCAACAAGTCCGCCCCCGTACGCGCCCCAACGACCTGGTAGAACAGGCTGAGCGCGCGCAATTGGGTGGCGTGGTGCGC TCTGAACTTCTGTCAAAGCGCCCAAAGCTGCGGCCTGACAGCCTCAAGACAGAAGCACAGGAAAGCCAGCCTGCTACGGC TTTGGCCGTGGCGAGCGCCCCGCAGCCACGGGCACGCCCGACCAATTTTGCAAATATCGTGGACCGCGCCCAGCGTCGCC AGCAACAGGCGCCCGATCAAAGCTCCAGCGCAACCGTTGCGTCTGCAGCGGTGACACCGGCCATCCCGTCTTCGGCGTCG GTTGCCCGCCAGGCGACCACCCAGCGGGCGCTCAACCTGCGGCGTCTCAATCTCATTGGCGTCTATGGCAAGCCTTCCGA CCGGCGCGCCTTGGTGCGCCTGCCGTCTGGCCGCTATGTGAAAGTCAAAGTGGGCGACCGCATCGACGGCGGTCGAATCG TCGCGATCGGTGACAGCCAGTTGCAGTATCAAAAAGGCAGTCGGAACACGGTACTCAACCTGCCAAACGGCTGA
Upstream 100 bases:
>100_bases GCTTTAGGGTAGGTCGTGAATGGTTTTCGCGAATGTCCCCTCACCGAGGGATCTTGGCGCCACAGGATGAGGCGCGCAGA CAAAAGACCCTGATGACCTG
Downstream 100 bases:
>100_bases TATTCCGGCGCACCACTTGAGGGCGCAACGTTCCTGAAGTGAACGCAAAAGCCGGGCAAATTGCCCGGCTTTCTCTTTTG TATTCAAGGGGCGGCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 877; Mature: 877
Protein sequence:
>877_residues MKPEFALSLSFDGITVLTRGAGGWYRLGSVSPDAKDLPEQLAKLRAEALALSEAPLHAKLVLPDSQIRYLSLETGELSHD ARISAARAALEGATPYKVDELAFDISVDGAITHVAAVALVTLDEAESFATEHGFAPVSFVAAPEDAAYLGEPFFGTARSA RHLTVEPDGIAVVEVPPPADPAVAKGDTAEEPDLYPESAADDDLAPRSDAPIILPAAPPVLDASPEEAAPSTDDSTDTKL ADTEDETAAQSAESTSAEEPEDIGPAVGFSSRRSRAKLEVTSTKTTAPKAPSVTPKSAGTSEPAAPKAPSATTAKTGVAL ATSSVPAAPSLALPTPVLAHTTSAPPKPSPSAIAQPVSGPAPEQLQTPQARPMRARSGRIGLLAAGLAAVSAIGAWAVVQ ELPNLWSDLKRADLIETEDPVATPVLAAPDAALDANKELTTTAQGGLGLNLPSAPARTVATGAETGPAPGELAADTLTET DAAVLEALGAPVVDEAAPLDGQDLIIASLPAPQDITSGTSETALAPIDDEAAVFDDSAEIDPEALADGVVPEDQPTDLLQ EAPSELEQAAQYAATGIWQQVPDIADVPALISLDNVYVASIDNTELSQDAIALPAPDAFETDTPFGAVSSPTEAGRQFDF DDRGLVVASPDGTLNPDGIMIYAGRPVKVPPPTPDRPTERVLAAAEEAERLALLQQVRPRTRPNDLVEQAERAQLGGVVR SELLSKRPKLRPDSLKTEAQESQPATALAVASAPQPRARPTNFANIVDRAQRRQQQAPDQSSSATVASAAVTPAIPSSAS VARQATTQRALNLRRLNLIGVYGKPSDRRALVRLPSGRYVKVKVGDRIDGGRIVAIGDSQLQYQKGSRNTVLNLPNG
Sequences:
>Translated_877_residues MKPEFALSLSFDGITVLTRGAGGWYRLGSVSPDAKDLPEQLAKLRAEALALSEAPLHAKLVLPDSQIRYLSLETGELSHD ARISAARAALEGATPYKVDELAFDISVDGAITHVAAVALVTLDEAESFATEHGFAPVSFVAAPEDAAYLGEPFFGTARSA RHLTVEPDGIAVVEVPPPADPAVAKGDTAEEPDLYPESAADDDLAPRSDAPIILPAAPPVLDASPEEAAPSTDDSTDTKL ADTEDETAAQSAESTSAEEPEDIGPAVGFSSRRSRAKLEVTSTKTTAPKAPSVTPKSAGTSEPAAPKAPSATTAKTGVAL ATSSVPAAPSLALPTPVLAHTTSAPPKPSPSAIAQPVSGPAPEQLQTPQARPMRARSGRIGLLAAGLAAVSAIGAWAVVQ ELPNLWSDLKRADLIETEDPVATPVLAAPDAALDANKELTTTAQGGLGLNLPSAPARTVATGAETGPAPGELAADTLTET DAAVLEALGAPVVDEAAPLDGQDLIIASLPAPQDITSGTSETALAPIDDEAAVFDDSAEIDPEALADGVVPEDQPTDLLQ EAPSELEQAAQYAATGIWQQVPDIADVPALISLDNVYVASIDNTELSQDAIALPAPDAFETDTPFGAVSSPTEAGRQFDF DDRGLVVASPDGTLNPDGIMIYAGRPVKVPPPTPDRPTERVLAAAEEAERLALLQQVRPRTRPNDLVEQAERAQLGGVVR SELLSKRPKLRPDSLKTEAQESQPATALAVASAPQPRARPTNFANIVDRAQRRQQQAPDQSSSATVASAAVTPAIPSSAS VARQATTQRALNLRRLNLIGVYGKPSDRRALVRLPSGRYVKVKVGDRIDGGRIVAIGDSQLQYQKGSRNTVLNLPNG >Mature_877_residues MKPEFALSLSFDGITVLTRGAGGWYRLGSVSPDAKDLPEQLAKLRAEALALSEAPLHAKLVLPDSQIRYLSLETGELSHD ARISAARAALEGATPYKVDELAFDISVDGAITHVAAVALVTLDEAESFATEHGFAPVSFVAAPEDAAYLGEPFFGTARSA RHLTVEPDGIAVVEVPPPADPAVAKGDTAEEPDLYPESAADDDLAPRSDAPIILPAAPPVLDASPEEAAPSTDDSTDTKL ADTEDETAAQSAESTSAEEPEDIGPAVGFSSRRSRAKLEVTSTKTTAPKAPSVTPKSAGTSEPAAPKAPSATTAKTGVAL ATSSVPAAPSLALPTPVLAHTTSAPPKPSPSAIAQPVSGPAPEQLQTPQARPMRARSGRIGLLAAGLAAVSAIGAWAVVQ ELPNLWSDLKRADLIETEDPVATPVLAAPDAALDANKELTTTAQGGLGLNLPSAPARTVATGAETGPAPGELAADTLTET DAAVLEALGAPVVDEAAPLDGQDLIIASLPAPQDITSGTSETALAPIDDEAAVFDDSAEIDPEALADGVVPEDQPTDLLQ EAPSELEQAAQYAATGIWQQVPDIADVPALISLDNVYVASIDNTELSQDAIALPAPDAFETDTPFGAVSSPTEAGRQFDF DDRGLVVASPDGTLNPDGIMIYAGRPVKVPPPTPDRPTERVLAAAEEAERLALLQQVRPRTRPNDLVEQAERAQLGGVVR SELLSKRPKLRPDSLKTEAQESQPATALAVASAPQPRARPTNFANIVDRAQRRQQQAPDQSSSATVASAAVTPAIPSSAS VARQATTQRALNLRRLNLIGVYGKPSDRRALVRLPSGRYVKVKVGDRIDGGRIVAIGDSQLQYQKGSRNTVLNLPNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90858; Mature: 90858
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEFALSLSFDGITVLTRGAGGWYRLGSVSPDAKDLPEQLAKLRAEALALSEAPLHAKL CCCCEEEEEECCCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE VLPDSQIRYLSLETGELSHDARISAARAALEGATPYKVDELAFDISVDGAITHVAAVALV ECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHEEEEEECCHHHHHHHHHHHH TLDEAESFATEHGFAPVSFVAAPEDAAYLGEPFFGTARSARHLTVEPDGIAVVEVPPPAD HHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC PAVAKGDTAEEPDLYPESAADDDLAPRSDAPIILPAAPPVLDASPEEAAPSTDDSTDTKL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCCCCEE ADTEDETAAQSAESTSAEEPEDIGPAVGFSSRRSRAKLEVTSTKTTAPKAPSVTPKSAGT CCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC SEPAAPKAPSATTAKTGVALATSSVPAAPSLALPTPVLAHTTSAPPKPSPSAIAQPVSGP CCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHCCCCCC APEQLQTPQARPMRARSGRIGLLAAGLAAVSAIGAWAVVQELPNLWSDLKRADLIETEDP CCHHHCCCCCCCCHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VATPVLAAPDAALDANKELTTTAQGGLGLNLPSAPARTVATGAETGPAPGELAADTLTET CCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH DAAVLEALGAPVVDEAAPLDGQDLIIASLPAPQDITSGTSETALAPIDDEAAVFDDSAEI HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCEECCCCCCCCEECCCCCC DPEALADGVVPEDQPTDLLQEAPSELEQAAQYAATGIWQQVPDIADVPALISLDNVYVAS CHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEECCEEEEE IDNTELSQDAIALPAPDAFETDTPFGAVSSPTEAGRQFDFDDRGLVVASPDGTLNPDGIM CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEE IYAGRPVKVPPPTPDRPTERVLAAAEEAERLALLQQVRPRTRPNDLVEQAERAQLGGVVR EECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SELLSKRPKLRPDSLKTEAQESQPATALAVASAPQPRARPTNFANIVDRAQRRQQQAPDQ HHHHHCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC SSSATVASAAVTPAIPSSASVARQATTQRALNLRRLNLIGVYGKPSDRRALVRLPSGRYV CCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEEEEECCCCCEE KVKVGDRIDGGRIVAIGDSQLQYQKGSRNTVLNLPNG EEEECCCCCCCEEEEECCCCEEECCCCCCEEEECCCC >Mature Secondary Structure MKPEFALSLSFDGITVLTRGAGGWYRLGSVSPDAKDLPEQLAKLRAEALALSEAPLHAKL CCCCEEEEEECCCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE VLPDSQIRYLSLETGELSHDARISAARAALEGATPYKVDELAFDISVDGAITHVAAVALV ECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHEEEEEECCHHHHHHHHHHHH TLDEAESFATEHGFAPVSFVAAPEDAAYLGEPFFGTARSARHLTVEPDGIAVVEVPPPAD HHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC PAVAKGDTAEEPDLYPESAADDDLAPRSDAPIILPAAPPVLDASPEEAAPSTDDSTDTKL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCCCCEE ADTEDETAAQSAESTSAEEPEDIGPAVGFSSRRSRAKLEVTSTKTTAPKAPSVTPKSAGT CCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC SEPAAPKAPSATTAKTGVALATSSVPAAPSLALPTPVLAHTTSAPPKPSPSAIAQPVSGP CCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHCCCCCC APEQLQTPQARPMRARSGRIGLLAAGLAAVSAIGAWAVVQELPNLWSDLKRADLIETEDP CCHHHCCCCCCCCHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VATPVLAAPDAALDANKELTTTAQGGLGLNLPSAPARTVATGAETGPAPGELAADTLTET CCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH DAAVLEALGAPVVDEAAPLDGQDLIIASLPAPQDITSGTSETALAPIDDEAAVFDDSAEI HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCEECCCCCCCCEECCCCCC DPEALADGVVPEDQPTDLLQEAPSELEQAAQYAATGIWQQVPDIADVPALISLDNVYVAS CHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEECCEEEEE IDNTELSQDAIALPAPDAFETDTPFGAVSSPTEAGRQFDFDDRGLVVASPDGTLNPDGIM CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEE IYAGRPVKVPPPTPDRPTERVLAAAEEAERLALLQQVRPRTRPNDLVEQAERAQLGGVVR EECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SELLSKRPKLRPDSLKTEAQESQPATALAVASAPQPRARPTNFANIVDRAQRRQQQAPDQ HHHHHCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC SSSATVASAAVTPAIPSSASVARQATTQRALNLRRLNLIGVYGKPSDRRALVRLPSGRYV CCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEEEEECCCCCEE KVKVGDRIDGGRIVAIGDSQLQYQKGSRNTVLNLPNG EEEECCCCCCCEEEEECCCCEEECCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA