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The map label for this gene is ydeB [H]

Identifier: 99080417

GI number: 99080417

Start: 613567

End: 614076

Strand: Direct

Name: ydeB [H]

Synonym: TM1040_0576

Alternate gene names: 99080417

Gene position: 613567-614076 (Clockwise)

Preceding gene: 99080416

Following gene: 99080419

Centisome position: 19.17

GC content: 57.06

Gene sequence:

>510_bases
ATGACCAAATCGAAGAAGCTCGAATTCCGCCCCAATGATTTCATTGTATACCCAGCCCATGGCGTTGGGCAGATCATTTC
GATCGAGGAGCAGGAAGTGGCCGGCTACAAGCTGGAGCTTTTCGTAATCACCTTTGAAAAAGACAAGATGACCCTGCGCG
TGCCGACGCATAAGGCCATCGACATCGGCATGCGTTCGCTGTCTTCCCCTGATGTGATCAATCAGGCGATGAAGACGCTG
AAAGGCAAGGCCAAGGTCAAGCGCGCCATGTGGTCGCGTCGGGCACAGGAATACGAACAGAAGATCAATTCCGGCGATCT
GATCTCCATTGCCGAAGTGGTGCGCGACCTGCACCGTACCGATGATCAGCGCGAGCAGAGCTATTCCGAGCGTCAGTTGT
ATGAAGCCGCGCTCGAGCGTCTGACCCGCGAAGTTGCGGCCGTGTCCGGTGGCGACGAAATCGCGGCGGCCAAGCAGGTT
GATGAGGTCCTGACCTCCCGCGCTGCCTGA

Upstream 100 bases:

>100_bases
CCAAACCGACAGCCGGCGCGCATACTCCGTATGCCGCATGGGCCCTCTTTGGCGTGGCCTAAACGGCATGATTGCCGTGT
CATCGCGAGGAAAGACCTGT

Downstream 100 bases:

>100_bases
TCTTTCCGGATCCCAATATCAAAGGCCGCCCGATTGGGCGGCCTTTTTTGATGCGAGAGGGGCCTTTCAGAGAAGCGCGA
GCAATGTGAGACCAAGTGCG

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTKSKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAIDIGMRSLSSPDVINQAMKTL
KGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQV
DEVLTSRAA

Sequences:

>Translated_169_residues
MTKSKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAIDIGMRSLSSPDVINQAMKTL
KGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQV
DEVLTSRAA
>Mature_168_residues
TKSKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAIDIGMRSLSSPDVINQAMKTLK
GKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVD
EVLTSRAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19125; Mature: 18994

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAI
CCCCCCCEECCCCEEEECCCCCCCEEECCHHHHCCEEEEEEEEEEECCCEEEECCCCHHH
DIGMRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
DDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKSKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAI
CCCCCCEECCCCEEEECCCCCCCEEECCHHHHCCEEEEEEEEEEECCCEEEECCCCHHH
DIGMRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
DDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]